View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10936_low_6 (Length: 445)
Name: NF10936_low_6
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 173 - 427
Target Start/End: Original strand, 44764791 - 44765045
Alignment:
| Q |
173 |
ccataatccatgttggctagtcactataatgccatgtcataaaaaattgaaaactcttgcacaaaaatgaacgaggactatgtcatcagaaacaacaatc |
272 |
Q |
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| T |
44764791 |
ccataatccatgttggctagtcactataatgccatgtcataaaaaattgaaaactcttgcacaaaaatgaacgaggactatgtcatcagaaacaacaatc |
44764890 |
T |
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| Q |
273 |
aacatgaatatgatttacttactactttattacttatacagattgatatacttgttaaatttatcatcatttcacctaattgttaaacagttgactcatt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44764891 |
aacatgaatatgatttacttactactttattacttatacagattgatatacttgtcgaatttatcatcatttcacctaattgttaaacagttgacccatt |
44764990 |
T |
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| Q |
373 |
tctcgcaatgatctagattccaacttcctttgacaacatcaaaatatgcttggtc |
427 |
Q |
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| T |
44764991 |
tctcgcaatgatctagattccaacttcctttgacaacatcaaaatatgcttggtc |
44765045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 176 - 427
Target Start/End: Original strand, 28359952 - 28360201
Alignment:
| Q |
176 |
taatccatgttggctagtcactataatgccatgtcataaaaaattgaaaactcttgcacaaaaatgaacgaggactatgtcatcagaaacaacaatcaac |
275 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| || |
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| T |
28359952 |
taatccatgttggctagtgactataattccatgtcataaaaaattgaaaactc---cacataaatgaacgaggactatgtgatcagaaacaacaat-aat |
28360047 |
T |
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| Q |
276 |
atgaatat--gatttacttactactttattacttatacagattgatatacttgttaaatttatcatcatttcacctaattgttaaacagttgactcattt |
373 |
Q |
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| T |
28360048 |
atgaatatatgatttacttactactttattacttatatagattgatatatttgtcgaatttatcatcatttcacctaattgttaaataattgaaccattt |
28360147 |
T |
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| Q |
374 |
ctcgcaatgatctagattccaacttcctttgacaacatcaaaatatgcttggtc |
427 |
Q |
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| T |
28360148 |
ctcgcaatgatctagattccaacttcctttgacgacatcaaaatatgcatggtc |
28360201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44764619 - 44764702
Alignment:
| Q |
1 |
atagaactcattttctaaacaattcgttttgggtggattttattaactatttgaactcaatttcttagttaatatcaacatgag |
84 |
Q |
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| T |
44764619 |
atagaactcattttctaaacaattcgtttagggtggattttattaactatttgaactcaatttcttagttaatatcaacatgag |
44764702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 28359784 - 28359863
Alignment:
| Q |
5 |
aactcattttctaaacaattcgttttgggtggattttattaactatttgaactcaatttcttagttaatatcaacatgag |
84 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28359784 |
aactcattttctaaacaattcgtttagggtggattttattaactatttgaactcaatttcttaattaatatcaacatgag |
28359863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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