View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10936_low_7 (Length: 395)
Name: NF10936_low_7
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_low_7 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 33643086 - 33642724
Alignment:
| Q |
16 |
acatcagatgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33643086 |
acatcagatgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtg |
33642987 |
T |
|
| Q |
116 |
gaactttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33642986 |
gaactttgtaaactacatccactccatacactttcaatatatgctcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcac |
33642887 |
T |
|
| Q |
216 |
acctattttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33642886 |
acctattttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtta |
33642787 |
T |
|
| Q |
316 |
cgattgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgcttcg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33642786 |
cgattgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgcttcg |
33642724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 374
Target Start/End: Original strand, 33402218 - 33402568
Alignment:
| Q |
24 |
tgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttg |
123 |
Q |
| |
|
|||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||||| ||| |||||||||| |||||||| |
|
|
| T |
33402218 |
tgccaaattttgataattactcataataattttctcagctttgaaagcttttcgacaaaataacttatgagattcggtccaattcaaaagttgaactttg |
33402317 |
T |
|
| Q |
124 |
taaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattt |
223 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||| | ||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
33402318 |
taaactacgtccacttcatactctttcaatatatgttcatctctagaaatgataataattctactacccgcacctaaacattcacgatgcacacctattt |
33402417 |
T |
|
| Q |
224 |
tttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgca |
323 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
33402418 |
tttccaattgttcaacttgatccacattatcaaaaatcagaagagccttttcacgacgtagcctacgttgtatcaaatcaattgcactgtaacgattgca |
33402517 |
T |
|
| Q |
324 |
tatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
33402518 |
tatttgatggtgttctatgccgagagtttgatgtaggatttgcttttgtgc |
33402568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 374
Target Start/End: Original strand, 33411557 - 33411907
Alignment:
| Q |
24 |
tgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttg |
123 |
Q |
| |
|
|||||| ||| |||||| |||||||||| ||||||||| ||||||||||||||||||||| |||| | |||| ||||| ||||| ||||||||||||| |
|
|
| T |
33411557 |
tgccaaattttgataatcactcataataattttctcaactttgaaagcttttcgacaaaataactcgtaagaatctgtactattcataagtggaactttg |
33411656 |
T |
|
| Q |
124 |
taaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattt |
223 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| | | ||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
33411657 |
taaactacatccactccgtactctttcaatatatgctcatctctagaaatgataacgattctactacccgcacctaaccattcacgatgcacagctattt |
33411756 |
T |
|
| Q |
224 |
tttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgca |
323 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33411757 |
tttccaattgttcaacttgatccacattatcaaaaatcagaagggccttttcatgacgtaacctacgtcgtatcaaatcagttgcactgtaacgattgca |
33411856 |
T |
|
| Q |
324 |
tatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||||||| ||||||| |
|
|
| T |
33411857 |
tatttgatggtgttctatgccgacagtttgaagtaggatttgcctttgtgc |
33411907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 41 - 374
Target Start/End: Original strand, 33389693 - 33390026
Alignment:
| Q |
41 |
tactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttgtaaactacatccactcc |
140 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||| |||||| ||| || ||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33389693 |
tactcataataattttctcatgtttgaaagctttttgacaaaataacttgtgagaatcggtccgattcaaaagtggaactttgtaaactacgtccactcc |
33389792 |
T |
|
| Q |
141 |
atacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattttttcaaattgttcaact |
240 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| | | ||||||||||||||||||| |||||| ||||| |||||||||| |||||||| || |
|
|
| T |
33389793 |
atactctttcaatatatgctcatctctagaaatgataattattctactacctgcacctaaccactcacgatgcacagctattttttccgattgttcacct |
33389892 |
T |
|
| Q |
241 |
tgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgcatatttgatggtgttcta |
340 |
Q |
| |
|
||||| |||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
33389893 |
tgatccacattatcaagaatcactagggtcttttcacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttgatggtgtttta |
33389992 |
T |
|
| Q |
341 |
tgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||| |
|
|
| T |
33389993 |
tgtcgagagtttgaaatagaatttgcttttgtgc |
33390026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 374
Target Start/End: Original strand, 33273408 - 33273746
Alignment:
| Q |
36 |
ataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttgtaaactacatcc |
135 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| ||||||| |||||| ||| |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
33273408 |
ataattactcataataactttctcaaatttgaaagctttttgacaaaataacttgtgagaatctgtccaattcaaaagtggaactttgtaaactgcatcc |
33273507 |
T |
|
| Q |
136 |
actccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattttttcaaattgtt |
235 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
33273508 |
actccatagtatttcaatatatgctcatctctagaaatgattataattctactacctgcacctaaccattcacgatgcacacctattttttccaactgtg |
33273607 |
T |
|
| Q |
236 |
caacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgcatatttgatggtg |
335 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || | ||||||| |||||||| ||||||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
33273608 |
caacttgatccacattatcaagaatcagaaggaccctttcacgacatagcctacttcgtatcaaattagttacgctgtaatgattgcatatttgatggtg |
33273707 |
T |
|
| Q |
336 |
ttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
33273708 |
ttctatgccgagagtttgaagtaggatttgcttttgtgc |
33273746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 374
Target Start/End: Complemental strand, 31561285 - 31560935
Alignment:
| Q |
24 |
tgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttg |
123 |
Q |
| |
|
|||||| ||| |||||| |||||||||| ||||||||| ||||||||||||||||||||| ||| || ||| || | |||||||||||||||||||||| |
|
|
| T |
31561285 |
tgccaaattttgataatcactcataataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttg |
31561186 |
T |
|
| Q |
124 |
taaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattt |
223 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
31561185 |
taaactacatccactccatactctttcaatatatgctcatctctagaaatgataataattctactccctgcacctaaccattcacgacgcacagctattt |
31561086 |
T |
|
| Q |
224 |
tttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgca |
323 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||||||||||||| | ||| ||| ||| | ||| ||||||| |||||| ||||| ||||||| |
|
|
| T |
31561085 |
tttccaattgtccaacttgatctacattatcaagaatcagaagggccctttcatgacatagatttattcgcatcaaattagttgcgctgtaatgattgca |
31560986 |
T |
|
| Q |
324 |
tatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
|||||||| |||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
31560985 |
tatttgattgtgttctatgccgacagtttgaagtaggatttgcttttgtgc |
31560935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 24 - 374
Target Start/End: Original strand, 33306090 - 33306440
Alignment:
| Q |
24 |
tgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttg |
123 |
Q |
| |
|
|||||| ||| ||||||||| || ||| | ||||||||||||||||||||||||||||| |||||| |||||| | | |||||| |||||||||||| |
|
|
| T |
33306090 |
tgccaaattttgataattacccaatataatgttctcaagtttgaaagcttttcgacaaaataacttgtgagattcggccatattcaagagtggaactttg |
33306189 |
T |
|
| Q |
124 |
taaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattt |
223 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||||| |||||||||||||||| || | | |||||||||||||||||||||| ||| |||| | |||| |
|
|
| T |
33306190 |
taaaatacatccactccatactccttcaatatatgctcatctctagaaatgacaacgattctactacctgcacctaaccattcgcgatgcactgcaattt |
33306289 |
T |
|
| Q |
224 |
tttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgca |
323 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33306290 |
tttccaattgttcaacttcattgacattatcaagaatcagaaggaccttttcacgacgtagcctacgtcgtatcaaatcagttgcgttgtaacgattgct |
33306389 |
T |
|
| Q |
324 |
tatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33306390 |
tattagatggtgttctatgcctagagtttgaaataggatttgcttttgtgc |
33306440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 374
Target Start/End: Original strand, 9168374 - 9168728
Alignment:
| Q |
23 |
atgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaacttt |
122 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| |||| |||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
9168374 |
atgccaaattttgataattactgctaatagttttctcaagtttgaaagcttttcgataaaataactagtgagattcagtctgattcaagagtggaacttt |
9168473 |
T |
|
| Q |
123 |
gtaaactacatcca---ctccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacct |
219 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||||||| ||| | |||||||| | ||||||| ||||||||||||||||| ||||| || |
|
|
| T |
9168474 |
gtaaactacatccagtactccatactctttcaatatatgctcatctcaagatacgataataattctactacccacacctaaccattcacgatgcacatct |
9168573 |
T |
|
| Q |
220 |
attttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgat |
319 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||| |||||| |||||||| || || |||| |||| |
|
|
| T |
9168574 |
attttttccaattgttcaacttgatcaacattatcaagaatcaggagggccctttcacgacatagtatacgtcatatcaaatttgtggcactgtagcgat |
9168673 |
T |
|
| Q |
320 |
tgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
9168674 |
tgcatatttgatggtgttctatgccgagagtttgaagtaagatttgcttttgtgc |
9168728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 36 - 374
Target Start/End: Original strand, 33264265 - 33264603
Alignment:
| Q |
36 |
ataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttgtaaactacatcc |
135 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| |||||| |||||| || ||| | | ||||| |||||| |||||||||||||||||| |
|
|
| T |
33264265 |
ataattactcataataattttctcagctttgaaagcttttctacaaaataacttgtgagcttcggcccaattcagaagtgggactttgtaaactacatcc |
33264364 |
T |
|
| Q |
136 |
actccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattttttcaaattgtt |
235 |
Q |
| |
|
||| ||| ||||||||||||| |||||||| |||||||||| | | |||||||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
33264365 |
actttatattctttcaatatatgttcatctcttgaaatgataacgattctactacctgcacctaaccattcacgatgcacacctattctttccaattgtt |
33264464 |
T |
|
| Q |
236 |
caacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgcatatttgatggtg |
335 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||| ||||||| ||||||| || ||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
33264465 |
caacttgatccacattatcaagaattagaagggtcttttcacgacttagcctatttcttatcaaatcagttgcactataatgattgcatatttgatggtg |
33264564 |
T |
|
| Q |
336 |
ttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33264565 |
ttctatgccaagagtttgatgtaggatttgcttttgtgc |
33264603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 26 - 372
Target Start/End: Original strand, 33059169 - 33059515
Alignment:
| Q |
26 |
ccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttgta |
125 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||| || || ||| || || ||| |||| ||||||||| |
|
|
| T |
33059169 |
ccaaattttgataattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgta |
33059268 |
T |
|
| Q |
126 |
aactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattttt |
225 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| | ||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
33059269 |
aactacatccactccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaaccattcacgatgcaccgctattttc |
33059368 |
T |
|
| Q |
226 |
tcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgcata |
325 |
Q |
| |
|
|| |||||||||||||| || |||||||||||||||| ||||| | ||| ||| |||| | | | |||||||| |||||| |||||||||||||| |
|
|
| T |
33059369 |
tccaattgttcaacttggtccacattatcaagaatcataagggttctttcatgacatagcttcctttgtatcaaagtagttgcatggtaacgattgcata |
33059468 |
T |
|
| Q |
326 |
tttgatggtgttctatgccaagagtttgaaataggatttgcttttgt |
372 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
33059469 |
tttgttggtgttctatgccgagagtttgaaataggatttgtttttgt |
33059515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 36 - 374
Target Start/End: Original strand, 33287158 - 33287496
Alignment:
| Q |
36 |
ataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttgtaaactacatcc |
135 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||||||| ||| || || ||| || || ||| |||||||||||||| ||||||||| |
|
|
| T |
33287158 |
ataatttctcataataattttctcttctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaagagtggaactttgtagactacatcc |
33287257 |
T |
|
| Q |
136 |
actccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattttttcaaattgtt |
235 |
Q |
| |
|
||||||||| ||| ||||||||| |||||||||||||||||||||| | |||||||| | ||||| ||||||||| |||||||||||||||| ||||||| |
|
|
| T |
33287258 |
actccatactcttccaatatatgctcatctctagaaatgataataattctactacctacgcctaaacattcacgatgcacacctattttttccaattgtt |
33287357 |
T |
|
| Q |
236 |
caacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgcatatttgatggtg |
335 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||| | |||||||||||||||| | ||||||||| |||||| || |||||||||||| ||||||| |
|
|
| T |
33287358 |
caactcgatctacattatcaagaataagaagggccctttcacgacgtagcctactttgtatcaaattagttgcacggtgacgattgcatatatgatggtc |
33287457 |
T |
|
| Q |
336 |
ttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
|||||| || | ||||||| |||||||| ||||||||| |
|
|
| T |
33287458 |
ttctattccgacggtttgaagtaggatttccttttgtgc |
33287496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 196 - 374
Target Start/End: Complemental strand, 31567432 - 31567254
Alignment:
| Q |
196 |
cctaaccattcacgacgcacacctattttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgta |
295 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||||||||||||| ||||| |||||||||||||||||| | ||||||| |||||| | ||||| |
|
|
| T |
31567432 |
cctaaccattcacgacgcacaactattttttccatttgttcaacttgatctacattttcaagaatcagaagggccctttcacgacatagccttcttcgta |
31567333 |
T |
|
| Q |
296 |
tcaaatcagttgccatgtaacgattgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
|||||| ||| || ||||| ||||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
31567332 |
tcaaattagtggcgctgtaatgattgcatatttgttggtgatctatgccaacagtttgaagtaggatttgcttttgtgc |
31567254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 33359971 - 33360033
Alignment:
| Q |
312 |
gtaacgattgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
||||| || |||||||| || ||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
33359971 |
gtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgc |
33360033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 377
Target Start/End: Complemental strand, 17439304 - 17438951
Alignment:
| Q |
24 |
tgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttg |
123 |
Q |
| |
|
|||||| ||| ||||||||||||||||| | ||||||| ||||||||||||||||||||| |||||| |||| ||| || ||||||||||||||||||| |
|
|
| T |
17439304 |
tgccaaattttgataattactcataataatgttctcaactttgaaagcttttcgacaaaataacttgtaagaatctctccaattcaaaagtggaactttg |
17439205 |
T |
|
| Q |
124 |
taaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattt |
223 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
17439204 |
taaactacatccactccatactttttcaatatatgctcatctctagaaatgataatgattctactacctgcacctaaccattcaagatgcacatctattt |
17439105 |
T |
|
| Q |
224 |
tttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgca |
323 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| ||| | ||| ||| ||| ||| | |||||||||| ||||| ||||||||||||| |
|
|
| T |
17439104 |
tttccaattgttcaacttgatccacattatcaagaatcagaagtgccctttcatgacatagtctatgccgtatcaaatatgttgcactgtaacgattgca |
17439005 |
T |
|
| Q |
324 |
tatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgcttc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17439004 |
tatttgatggtgttctatgccaagagtttgaaatatgatttgcttttgtgcttc |
17438951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 23 - 374
Target Start/End: Original strand, 8363 - 8714
Alignment:
| Q |
23 |
atgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaacttt |
122 |
Q |
| |
|
||||||| ||| ||||||| |||| ||| ||||||||||||||||||||||| ||||||| |||||| ||| || ||| || ||| ||||||||||| |
|
|
| T |
8363 |
atgccaaattttgataatttttcatgataattttctcaagtttgaaagctttttgacaaaataacttgtgagactcggtccaatccaacagtggaacttt |
8462 |
T |
|
| Q |
123 |
gtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctatt |
222 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||||| |||||||||| | | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8463 |
gtaaactacatccactttatattctttcaatatatgttcatctcttgaaatgataacgattctactacctgcacctaaccattcacgatgcacacctatt |
8562 |
T |
|
| Q |
223 |
ttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgtaacgattgc |
322 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| ||||||| ||| ||||||| ||||||| ||| ||||||||||||||| | ||| |||||| |
|
|
| T |
8563 |
ctttccaattgttcaacttgatccacattatcaagaattagaagggtcttttcacgacttagcctatgtcttatcaaatcagttgcactataatgattgc |
8662 |
T |
|
| Q |
323 |
atatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8663 |
atatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgc |
8714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 108 - 339
Target Start/End: Complemental strand, 31497319 - 31497088
Alignment:
| Q |
108 |
caaaagtggaactttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattca |
207 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| |||||| |||||| || ||||||||||||||||| | | ||||||| || ||||||| ||| |
|
|
| T |
31497319 |
caaaagaggaactttgtaaacctcatccactccatactctttcagtatatgctcgtctctagaaatgataatgattttactacccacatctaaccaatca |
31497220 |
T |
|
| Q |
208 |
cgacgcacacctattttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttg |
307 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||| | | || || |||||| ||||||||||| | || || |
|
|
| T |
31497219 |
cgacgaacaactattttttctaattgttcaactttatcaacattatcaaaaatcaaaaggatactttgacaacatagcctgcgtcgtatcaagttagatg |
31497120 |
T |
|
| Q |
308 |
ccatgtaacgattgcatatttgatggtgttct |
339 |
Q |
| |
|
| |||| | |||||||||| |||||||||||| |
|
|
| T |
31497119 |
cgatgtgaagattgcatatatgatggtgttct |
31497088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 31149941 - 31150191
Alignment:
| Q |
19 |
tcagatgccaactttcgataattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgca-agattctgtctgattcaaaagtgga |
117 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | |||||||||||||||||||||| ||| || ||| | ||| || ||| |||||| |||||| |
|
|
| T |
31149941 |
tcagatgccaacttatcataactactcataata---tgatcaagtttgaaagcttttcgactaaataa-ttgaagagagtcagtccgattcaggagtgga |
31150036 |
T |
|
| Q |
118 |
actttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacac |
217 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| ||||| || ||||||||||| ||||| | | |||| || |||||||||||||||||| ||| |
|
|
| T |
31150037 |
actttgtaaacaacatccactccatactctttcaagatatgctcgtctctagaaattataatgattctactccccgcacctaaccattcacgattcacgg |
31150136 |
T |
|
| Q |
218 |
ctattttttcaaattgttcaacttgatcaacattatcaagaatcagaagggcctt |
272 |
Q |
| |
|
||| ||| || | ||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
31150137 |
ctaatttctcgagttgttcaacttgatcaacattgtcaagaattataagggcctt |
31150191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 256
Target Start/End: Original strand, 31158878 - 31159076
Alignment:
| Q |
58 |
tcaagtttgaaagcttttcgacaaaacaacttgca-agattctgtctgattcaaaagtggaactttgtaaactacatccactccatacactttcaatata |
156 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| | ||| | ||| |||||| ||||||||||||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
31158878 |
tcaagtttgaaagctttttgacaaaacaa-ttgaagagagttagtcccattcaagagtggaactttgtaaactacatcaactccatactctttcaagata |
31158976 |
T |
|
| Q |
157 |
tgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattttttcaaattgttcaacttgatcaacattatcaa |
256 |
Q |
| |
|
|| |||||||||||||| |||| | | |||| ||||||||||| ||||||||| |||| ||| ||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
31158977 |
tgttcatctctagaaattataacgattctactccctgcacctaagcattcacgattcacagctaatttatcaagttgttcaactttatcaacattatcaa |
31159076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 339
Target Start/End: Complemental strand, 31502491 - 31502257
Alignment:
| Q |
108 |
caaaagtggaactttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattca |
207 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| | | |||||||||||| |||||||||||||| ||||| | | ||||||| |||||||||||||| |
|
|
| T |
31502491 |
caaaagaggaactttgtaaacttcatccactccaaaaaatttcaatatatgctcatctctagaaattataatgattttactacc-ccacctaaccattca |
31502393 |
T |
|
| Q |
208 |
c----gacgcacacctattttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatca |
303 |
Q |
| |
|
| || ||||||||||||||| | ||||||||||| |||||||||||||| ||||| |||| || | | ||||| |||||| ||||| ||||| | | |
|
|
| T |
31502392 |
ccacacacacacacctattttttccagttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagtta |
31502293 |
T |
|
| Q |
304 |
gttgccatgtaacgattgcatatttgatggtgttct |
339 |
Q |
| |
|
| ||| | || ||||||||||||||| ||||||| |
|
|
| T |
31502292 |
gatgcagtagaaagattgcatatttgattgtgttct |
31502257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 31490070 - 31489919
Alignment:
| Q |
105 |
attcaaaagtggaactttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccat |
204 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||||| ||||||| ||||| ||||||| |||||| ||||| | | |||| ||||||||||||||| |
|
|
| T |
31490070 |
attcaagagtggaactctgtaaactacatcaactccatactctttcaagatatgttcatctccagaaattataatgattctactccctgcacctaaccat |
31489971 |
T |
|
| Q |
205 |
tcacgacgcacacctattttttcaaattgttcaacttgatcaacattatcaa |
256 |
Q |
| |
|
|||||| |||||| | ||| |||| |||| |||||| |||||||||||||| |
|
|
| T |
31489970 |
tcacgattcacacccaatttatcaagttgtccaactttatcaacattatcaa |
31489919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 115 - 292
Target Start/End: Complemental strand, 31477359 - 31477182
Alignment:
| Q |
115 |
ggaactttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgca |
214 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||| ||||| | | |||| || |||||| ||||||||||| | |
|
|
| T |
31477359 |
ggaactttgtaaacttcatctactccataattcttcaatatatgctcatctctagaaattataatgattttacttccctcacctagccattcacgacaaa |
31477260 |
T |
|
| Q |
215 |
cacctattttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtc |
292 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||||||||| ||||| |||| || | | ||||| ||| ||||||| |
|
|
| T |
31477259 |
cacctattttttccagttgttcaactttatcaacattatcaaaaatcataaggaccctttgacgacatagtctacgtc |
31477182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 210
Target Start/End: Original strand, 31029309 - 31029462
Alignment:
| Q |
57 |
ctcaagtttgaaagcttttcgacaaaacaacttgca-agattctgtctgattcaaaagtggaactttgtaaactacatccactccatacactttcaatat |
155 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||| | ||| | |||| |||||| |||||||||||||||||| |||| ||||||||| | ||||| || |
|
|
| T |
31029309 |
ctcaagtttgaaagctttttgacaaaataa-ttgaagagagttggtctcattcaagagtggaactttgtaaacttcatcaactccatactcattcaagat |
31029407 |
T |
|
| Q |
156 |
atgatcatctctagaaatgataataactatactacctgcacctaaccattcacga |
210 |
Q |
| |
|
||| |||||||||||||| ||||| | | |||| ||||||||||| |||||||| |
|
|
| T |
31029408 |
atgctcatctctagaaattataatgattctactccctgcacctaaatattcacga |
31029462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 31019429 - 31019581
Alignment:
| Q |
58 |
tcaagtttgaaagcttttcgacaaaacaacttgca-agattctgtctgattcaaaagtggaactttgtaaactacatccactccatacactttcaatata |
156 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||| | ||| | |||| |||||| |||||||||||||||||| |||| ||||||||| | ||||| ||| |
|
|
| T |
31019429 |
tcaagtttgaaagctttttgacaaaataa-ttgaagagagttggtctcattcaagagtggaactttgtaaacttcatcaactccatactcattcaagata |
31019527 |
T |
|
| Q |
157 |
tgatcatctctagaaatgataataactatactacctgcacctaaccattcacga |
210 |
Q |
| |
|
|| |||||||||||||| ||||| | | |||| ||| ||||||| ||||||||| |
|
|
| T |
31019528 |
tgctcatctctagaaattataatgattctactccctacacctaaacattcacga |
31019581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 289
Target Start/End: Original strand, 31161332 - 31161514
Alignment:
| Q |
105 |
attcaaaagtggaactttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccat |
204 |
Q |
| |
|
|||||| | |||||||||||| || |||||||| || |||||||||| ||||| ||||||||| || | ||||| | | |||| || |||| ||||||| |
|
|
| T |
31161332 |
attcaacaatggaactttgtagacaacatccacaacaaacactttcaagatatgctcatctctaaaagttataatgattctactccccgcacataaccat |
31161431 |
T |
|
| Q |
205 |
tcacgacgcacacctattttttcaaattgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctac |
289 |
Q |
| |
|
||| || | || ||| |||||| | ||||||||||||||||||||| |||||||| | ||||| ||| ||| || |||||||| |
|
|
| T |
31161432 |
tcatga--ctcagctagtttttcgagttgttcaacttgatcaacattgtcaagaattaaaagggactttacactacatagcctac |
31161514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 31033698 - 31033821
Alignment:
| Q |
146 |
ctttcaatatatgatcatctctagaaatgataataactatactacctgcacctaaccattcacgacgcacacctattttttcaaattgttcaacttgatc |
245 |
Q |
| |
|
||||||| |||||| ||||||||||| | |||| || | |||| || |||||||| ||||||| || |||| ||| ||| || |||||||||||||| |
|
|
| T |
31033698 |
ctttcaagatatgaacatctctagaagttataacaattctactcccagcacctaaacattcactactcacagctaatttctcctgctgttcaacttgatc |
31033797 |
T |
|
| Q |
246 |
aacattatcaagaatcagaagggc |
269 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
31033798 |
aacattatcaagaactagaagggc |
31033821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 31528083 - 31528159
Alignment:
| Q |
103 |
tgattcaaaagtggaactttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataat |
179 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||| ||||| |||||| |||||| ||||| ||||| |
|
|
| T |
31528083 |
tgattcaagagtggaactttgaaaactacatccactccatacctattcaagatatgagtatctctcgaaattataat |
31528159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 31245479 - 31245323
Alignment:
| Q |
103 |
tgattcaaaagtggaactttgtaaactacatccactccatacactttcaatatatgatcatctctagaaatgataataactatactacctgcacctaacc |
202 |
Q |
| |
|
|||| ||| ||| |||||||||| ||| |||| ||||||| | || |||| |||||| ||||||||||||| || || | | |||| |||| |||| || |
|
|
| T |
31245479 |
tgatccaagagtcgaactttgtacacttcatctactccatgctctctcaagatatgaacatctctagaaattatgatgattctactccctgtgcctagcc |
31245380 |
T |
|
| Q |
203 |
attcacgacgcacacctattttttcaaattgttcaacttgatcaacattatcaagaa |
259 |
Q |
| |
|
|||| || || | | | ||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
31245379 |
attctcgtgtcatagccaatttatccagttgttcaacttgatcaacattatcaagaa |
31245323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 31483229 - 31483160
Alignment:
| Q |
99 |
tgtctgattcaaaagtggaactttgtaaactacatccactccatacactttcaatatatgatcatctcta |
168 |
Q |
| |
|
||||| |||||| | |||||||||||||| | | |||||||||||| ||| ||| |||||| |||||||| |
|
|
| T |
31483229 |
tgtctcattcaagaatggaactttgtaaagtgcgtccactccatactcttccaagatatgagcatctcta |
31483160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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