View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10936_low_8 (Length: 356)
Name: NF10936_low_8
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 23258575 - 23258910
Alignment:
| Q |
5 |
acttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcacaatgaacaaatctccagcctt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23258575 |
acttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcacaatgaacaaatctccagcctt |
23258674 |
T |
|
| Q |
105 |
caaagtggtctccaaaactctcttaccatcaacaccaacaacctgaacacggccgctccccctaacaatgtaagtaacctgcaaagcagaatcacaagag |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23258675 |
caaagtggtctccaagactctcttaccatcaacaccaacaacctgaacacggccgcttcccctaacaatgtaagtaacctgcaaagcagaatcgcaagag |
23258774 |
T |
|
| Q |
205 |
aatccaggagagcacatggatcttccatcaatcctcacaaggtcagctcctaaaccaacctcaccaaccaaaggaagattcttggtgttcaagacaacaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23258775 |
aatccaggagagcacatggatcttccatcaatcctcacaagatcagctcctaaaccaacctcaccaaccaaaggaaggttcttggtgttcaagacaacaa |
23258874 |
T |
|
| Q |
305 |
cccttccaccattcttaatatcaacatccaatggtg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
23258875 |
cccttccaccattcttaatatcaacatccaatggtg |
23258910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 23276453 - 23276788
Alignment:
| Q |
5 |
acttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcacaatgaacaaatctccagcctt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23276453 |
acttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcacaatgaacaaatctccagcctt |
23276552 |
T |
|
| Q |
105 |
caaagtggtctccaaaactctcttaccatcaacaccaacaacctgaacacggccgctccccctaacaatgtaagtaacctgcaaagcagaatcacaagag |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
23276553 |
caaagtggtctccaagactctcttaccatcaacaccaacaacctgaacacggccgcttcccctaacaatgtaagtaacctgcaaagcagaatcgcaagag |
23276652 |
T |
|
| Q |
205 |
aatccaggagagcacatggatcttccatcaatcctcacaaggtcagctcctaaaccaacctcaccaaccaaaggaagattcttggtgttcaagacaacaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
23276653 |
aatccaggagagcacatggatcttccatcaatcctcacaagatcagctcctaaaccaacctcaccaaccaaaggaaggttcttggtgttcaagacaacaa |
23276752 |
T |
|
| Q |
305 |
cccttccaccattcttaatatcaacatccaatggtg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23276753 |
cccttccaccattcttaatatcaacatccaatggtg |
23276788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 27542974 - 27543313
Alignment:
| Q |
1 |
actcacttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcacaatgaacaaatctccag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||| ||||| || ||||||||||||||||| | |
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|
| T |
27542974 |
actcacttaggggtggtgatgatagaaaaccactccattccatcattgtcagcaatcttcgagacgacgaagaaccttggaacaatgaacaaatctccgg |
27543073 |
T |
|
| Q |
101 |
ccttcaaagtggtctccaaaactctcttaccatcaacaccaacaacctgaacacggccgctccccctaacaatgtaagtaacctgcaaagcagaatcaca |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
27543074 |
acttcaaagttgtctccaaaactctcttaccatcaacaccaacaacctgaacacggccgctccctctaacaatgtaagtaacctgtaaagcagaatcaca |
27543173 |
T |
|
| Q |
201 |
agagaatccaggagagcacatggatcttccatcaatcctcacaaggtcagctcctaaaccaacctcaccaaccaaaggaagattcttggtgttcaagaca |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27543174 |
agagaaaccaggagagcacatggatcttccatcaatcctcacaaggtcagctcctaaaccaacctcaccaaccaaaggaaggttcttggtgttcaagaca |
27543273 |
T |
|
| Q |
301 |
acaacccttccaccattcttaatatcaacatccaatggtg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27543274 |
acaacccttccaccattcttaatatcaacatccaatggtg |
27543313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 11136699 - 11136360
Alignment:
| Q |
1 |
actcacttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcacaatgaacaaatctccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11136699 |
actcacttaggggtagtgatgatagaaaaccactccattccatcattgtcagcaattttcgagacaacgaaaaacctcggcacaatgaacaaatctccag |
11136600 |
T |
|
| Q |
101 |
ccttcaaagtggtctccaaaactctcttaccatcaacaccaacaacctgaacacggccgctccccctaacaatgtaagtaacctgcaaagcagaatcaca |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11136599 |
ccttcaaagttgtctccaaaactctcttaccatcaacaccaacaacttgaacacggccacttcccctaacaatgtaagtaacctgtaaagcagaatcaca |
11136500 |
T |
|
| Q |
201 |
agagaatccaggagagcacatggatcttccatcaatcctcacaaggtcagctcctaaaccaacctcaccaaccaaaggaagattcttggtgttcaagaca |
300 |
Q |
| |
|
||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||| |
|
|
| T |
11136499 |
agagaatccgggcgagcacatggatcttccatcgatcctcacaaggtcggctcctaaaccaacctcaccgaccaaaggaaggttcttagtgttcaataca |
11136400 |
T |
|
| Q |
301 |
acaacccttccaccattcttaatatcaacatccaatggtg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11136399 |
acaacccttccaccattcttaatatcaacatccaatggtg |
11136360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 8986058 - 8986397
Alignment:
| Q |
1 |
actcacttaggggtagtgatgatagagaaccactccattccatcattgttagcaatctttgagacaacgaaaaacctcggcacaatgaacaaatctccag |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
8986058 |
actcacttaggggtagtgattatagaaaaccactccattccatcattttcagcaatctttgagacaacaaaaaacctcggcataatgaacaaatctccag |
8986157 |
T |
|
| Q |
101 |
ccttcaaagtggtctccaaaactctcttaccatcaacaccaacaacctgaacacggccgctccccctaacaatgtaagtaacctgcaaagcagaatcaca |
200 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8986158 |
ccttcaaagttgtctccaagactctcttaccatcaacaccaacaacctgaactcgtccgctccccctaacaatgtaagtaacctgcaaagcagaatcaca |
8986257 |
T |
|
| Q |
201 |
agagaatccaggagagcacatggatcttccatcaatcctcacaaggtcagctcctaaaccaacctcaccaaccaaaggaagattcttggtgttcaagaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
8986258 |
agagaatccaggagagcacatggatcttcaatcaatcctcattagatcagctcctaaaccaacctcaccaaccaaaggaaggttcttggtgttcaggaca |
8986357 |
T |
|
| Q |
301 |
acaacccttccaccattcttaatatcaacatccaatggtg |
340 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8986358 |
acaacccttccaccatttttaatatcaacatccaatggtg |
8986397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 33124983 - 33125044
Alignment:
| Q |
142 |
acaacctgaacacggccgctccccctaacaatgtaagtaacctgcaaagcagaatcacaaga |
203 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
33124983 |
acaacctgaacacgaccgctccctctaacaatgtaggtaacttgtaaagcagaatcacaaga |
33125044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 33125050 - 33125095
Alignment:
| Q |
283 |
ttcttggtgttcaagacaacaacccttccaccattcttaatatcaa |
328 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
33125050 |
ttctttgtgttcaaaagaacaacccttccaccattcttaatatcaa |
33125095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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