View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10937_high_6 (Length: 205)
Name: NF10937_high_6
Description: NF10937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10937_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 7656169 - 7655996
Alignment:
| Q |
16 |
agagggagaaatgtagaaagggtaagaacataactaagaaactttgatgagggaatattgtgtagaagttgtttgagatatttagttttatagatgaagg |
115 |
Q |
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| T |
7656169 |
agagggagaaatgtagaaagggtaagaacataactaagaaacttcgatgagggaatattgtgtagaagttgtttgagatatttagttttatagatgaagg |
7656070 |
T |
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| Q |
116 |
tttaggaaacaatgagagaaaaggaaataaaagaagggtgtgtgaatataagcaagggggtgtgaagaagaagg |
189 |
Q |
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| T |
7656069 |
tttaggaaacaatgagagaaaagaaaataaaagaagggtgtgtgaatataagcaagggggtgtgaagaagaagg |
7655996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 7650726 - 7650591
Alignment:
| Q |
31 |
gaaagggtaagaacataactaagaaactttgatgagggaatattgtgtagaagttgtttgagatatttagttttatagatgaaggtttaggaaacaatga |
130 |
Q |
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| T |
7650726 |
gaaagggtgagaatgtatctaggaaaccctgatgagagaatattgtgtagaatgtgtttatgatatttggttttatagatgaatgtttaggaagcaatgg |
7650627 |
T |
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| Q |
131 |
gagaaaaggaaataaaagaagggtgtgtgaatataagcaag |
171 |
Q |
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| T |
7650626 |
gcgaaaag-----aaatgaagggtgtgtgaatataagcaag |
7650591 |
T |
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