View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10937_low_4 (Length: 315)
Name: NF10937_low_4
Description: NF10937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10937_low_4 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 4506543 - 4506823
Alignment:
| Q |
15 |
atagagaaggaaacataatatcaagagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
4506543 |
atagagaaggaaacataatatcaagagcattcagaacattactctcaagttcattagaagtattgagaacaatagaagaggctctatgaaatgtttctgc |
4506642 |
T |
|
| Q |
115 |
tgcttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccag |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4506643 |
tgcttcaataataaattctatcctcaaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttctcaaacctggaatccag |
4506742 |
T |
|
| Q |
215 |
tctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagttaatgtcttgaaaaa |
295 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4506743 |
tctaccttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagttaatgtcttgaaaaa |
4506823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 4514567 - 4514302
Alignment:
| Q |
15 |
atagagaaggaaacataatatcaagagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgc |
114 |
Q |
| |
|
|||||||||| | |||| || ||||||||||| ||||| ||||||||| ||| |||||||||| |||| ||||| ||| |||||||||| | ||||| | |
|
|
| T |
4514567 |
atagagaagggagcatagaataaagagcattcataacatcactctcaagatcattagaagtatttaaaaaaatagcagaagctctatgaagtctatctac |
4514468 |
T |
|
| Q |
115 |
tgcttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccag |
214 |
Q |
| |
|
||||| |||||||||| | || |||| |||| ||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
4514467 |
catttcaaagataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttcagtctaaagtttcgcaaacctggaatccag |
4514368 |
T |
|
| Q |
215 |
tctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagt |
280 |
Q |
| |
|
|| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4514367 |
tcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataattgcaaaagt |
4514302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 37 - 272
Target Start/End: Original strand, 3172449 - 3172684
Alignment:
| Q |
37 |
aagagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatc |
136 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| ||||||| ||||||||||||| ||| ||| | ||| || ||||| || ||||||| |||||||||||| |
|
|
| T |
3172449 |
aagagtattcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtgacatttatctcctacttcaatcataaattctatc |
3172548 |
T |
|
| Q |
137 |
ctcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatc |
236 |
Q |
| |
|
|| |||| ||||||||| || |||| || ||| |||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
3172549 |
atcaaatcattaggatcttttatcctaattaaagtaggaagatgcttcaatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatc |
3172648 |
T |
|
| Q |
237 |
catttgttagataactctcatctgcatatcataatt |
272 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
3172649 |
catttgtttcataactctcatctgcatatcataatt |
3172684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 280
Target Start/End: Complemental strand, 4266589 - 4266344
Alignment:
| Q |
38 |
agagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcc |
137 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||||| ||| || |||| || |||| ||||||||| |||| |
|
|
| T |
4266589 |
agagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccgccacttcggtaataaattttatca |
4266490 |
T |
|
| Q |
138 |
tcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagt---ctactttagtgtccaaata |
234 |
Q |
| |
|
|| |||| ||||||||||| ||||| ||||||||||||| || |||| |||||||||| ||||||| ||||||||| | |||||| | || ||||| |
|
|
| T |
4266489 |
tcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaaccttgaatccagtcaccaactttattatctaaata |
4266390 |
T |
|
| Q |
235 |
tccatttgttagataactctcatctgcatatcataattacaaaagt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
4266389 |
tccatttgttagataactctcatctgcatatcgcaattgcaaaagt |
4266344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 4458304 - 4458549
Alignment:
| Q |
38 |
agagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcc |
137 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||||| |||| | ||||||| |||| |
|
|
| T |
4458304 |
agagtattcataacatcactctcaagttcataagaagtattgataacaatagaagaggctctatgacatctatctgccacttcggttataaattttatca |
4458403 |
T |
|
| Q |
138 |
tcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagt---ctactttagtgtccaaata |
234 |
Q |
| |
|
|| ||| ||||||||||| || |||||||||||||||| || |||| |||||||||| |||||||| |||||||| | ||||| |||||||||| |
|
|
| T |
4458404 |
tcaaattattaggatctgtaatctttataaaatcaggaaggtccttcaacctaaagttttgcaaacctgaaatccagtcaccgacttttttgtccaaata |
4458503 |
T |
|
| Q |
235 |
tccatttgttagataactctcatctgcatatcataattacaaaagt |
280 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
4458504 |
tccatttgttaaataactctcttctgcatattgtaattgcaaaagt |
4458549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 57 - 279
Target Start/End: Original strand, 4517049 - 4517271
Alignment:
| Q |
57 |
tctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcgaatcgttaggatctgt |
156 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||| |||| || |||||||| ||||||| |||| | ||| |||||||| || |
|
|
| T |
4517049 |
tctcaagttcatcagaagtattgaaaacaatagaattagcttcatgaaccctatcggccgcttcaatgataaattttatcattatatcattaggatcagt |
4517148 |
T |
|
| Q |
157 |
tgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctca |
256 |
Q |
| |
|
|| |||||||| ||||| || || || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
4517149 |
agttcttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctca |
4517248 |
T |
|
| Q |
257 |
tctgcatatcataattacaaaag |
279 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
4517249 |
tctgcatatcataatcacaaaag |
4517271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 4574994 - 4575257
Alignment:
| Q |
15 |
atagagaaggaaacataatatcaagagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgc |
114 |
Q |
| |
|
|||||||||| |||||| || | |||||||| ||||| ||||||||||||| ||||||||||||| || ||| ||| ||||||||| || ||||||| |
|
|
| T |
4574994 |
atagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtattgaataccataccagaagctctatgacatttatctgc |
4575093 |
T |
|
| Q |
115 |
tgcttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccag |
214 |
Q |
| |
|
||||| || ||||| |||| || | || ||||||| | ||||| |||| || ||||||||| |||| ||| ||||||||||||||||| |||||| |
|
|
| T |
4575094 |
cacttcagtattaaatcttatcgtcaagtcattaggattttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccag |
4575193 |
T |
|
| Q |
215 |
tctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaa |
278 |
Q |
| |
|
|| | ||| |||||||||||| |||||||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
4575194 |
tcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcataattgcaaaa |
4575257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 4561190 - 4561453
Alignment:
| Q |
15 |
atagagaaggaaacataatatcaagagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgc |
114 |
Q |
| |
|
|||||||||| |||||| || | |||||||| ||||| ||||||||||||| ||||||||||||| || ||| ||| |||||| || || ||||||| |
|
|
| T |
4561190 |
atagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtattgaataccataccagaagctctaagacatttatctgc |
4561289 |
T |
|
| Q |
115 |
tgcttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccag |
214 |
Q |
| |
|
||||| | ||||| |||| || | || ||||||| | ||||| |||| || ||||||||| |||| ||| ||||||||||||||||| |||||| |
|
|
| T |
4561290 |
cacttcagtgttaaatcttatcgtcaagtcattaggattttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccag |
4561389 |
T |
|
| Q |
215 |
tctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaa |
278 |
Q |
| |
|
|| ||||| ||||||| |||| |||||||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
4561390 |
tcaactttcgtgtccagatattcatttgttagatcactctcatctgcatgtcataattgcaaaa |
4561453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 278
Target Start/End: Original strand, 4481402 - 4481642
Alignment:
| Q |
38 |
agagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcc |
137 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||| ||||||||||| ||||| || ||| ||||| ||| || |||||| ||||| | || ||| ||| |
|
|
| T |
4481402 |
agagaattcataacatcactctcaagttcataagaagtattgataacaaaagcagatgctctttgacatttatctgtcacttcatttttatattttatga |
4481501 |
T |
|
| Q |
138 |
tcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatcc |
237 |
Q |
| |
|
|| | | |||||||||||| | | || ||||||||||| || |||| |||||||||||||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
4481502 |
tcaagtgattaggatctgttaccttaattaaatcaggaaggtccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatcc |
4481601 |
T |
|
| Q |
238 |
atttgttagataactctcatctgcatatcataattacaaaa |
278 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
4481602 |
atctgttaaataactctcatctgcatatcacaatcacaaaa |
4481642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 41 - 292
Target Start/End: Original strand, 4602504 - 4602755
Alignment:
| Q |
41 |
gcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcg |
140 |
Q |
| |
|
||||||| |||| ||||||||||||| | ||||||| |||| ||||| |||| |||||| |||| ||||||| ||||| || ||||||| | | |
|
|
| T |
4602504 |
gcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa |
4602603 |
T |
|
| Q |
141 |
aatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatt |
240 |
Q |
| |
|
||| || |||||||||||||| ||| | ||| ||| || |||| | |||||||||||||||||||||||| |||||||| || |||||| ||||||| |
|
|
| T |
4602604 |
tatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt |
4602703 |
T |
|
| Q |
241 |
tgttagataactctcatctgcatatcataattacaaaagttaatgtcttgaa |
292 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
4602704 |
tgttagataactatcatctgcatatcataagcacagaagttaatatcttgaa |
4602755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 4484115 - 4484005
Alignment:
| Q |
186 |
gtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttg-ttagataactctcatctgcatatcataattacaaaagttaat |
284 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||| |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
4484115 |
gtctaaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatcataattacaaaagttaat |
4484016 |
T |
|
| Q |
285 |
gtcttgaaaaa |
295 |
Q |
| |
|
| ||||||||| |
|
|
| T |
4484015 |
ggcttgaaaaa |
4484005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 149 - 284
Target Start/End: Original strand, 4593054 - 4593189
Alignment:
| Q |
149 |
ggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagat |
248 |
Q |
| |
|
|||||||||||||| ||| | |||| || || |||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
4593054 |
ggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttccaaatatccatttgttagat |
4593153 |
T |
|
| Q |
249 |
aactctcatctgcatatcataattacaaaagttaat |
284 |
Q |
| |
|
||||||||||||||||||| || || ||||||||| |
|
|
| T |
4593154 |
aactctcatctgcatatcaaaagtagcaaagttaat |
4593189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 57 - 281
Target Start/End: Original strand, 4571700 - 4571924
Alignment:
| Q |
57 |
tctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcgaatcgttaggatctgt |
156 |
Q |
| |
|
||||||||||| |||||||||| |||| || || ||||||||| ||| | ||||||||||||| |||||||||| | ||||||| || ||||| || |
|
|
| T |
4571700 |
tctcaagttcattagaagtattaaaaataaaagcagaggctctgtgagcccttcctgctgcttcaatgataaattctaccatcgaatcatttggatcagt |
4571799 |
T |
|
| Q |
157 |
tgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctca |
256 |
Q |
| |
|
|| |||||| |||| | ||| |||||| |||||| |||| ||||| || ||||| |||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
4571800 |
aatctgtataaaggcaggcaaatccctcagtcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctca |
4571899 |
T |
|
| Q |
257 |
tctgcatatcataattacaaaagtt |
281 |
Q |
| |
|
||||||||||| | ||||||||||| |
|
|
| T |
4571900 |
tctgcatatcaaatttacaaaagtt |
4571924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 4461964 - 4462074
Alignment:
| Q |
170 |
tcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcata |
269 |
Q |
| |
|
||||||| ||| |||| ||| || ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
4461964 |
tcaggaaaatccttcaatctgaaatttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatcata |
4462063 |
T |
|
| Q |
270 |
attacaaaagt |
280 |
Q |
| |
|
|||| |||||| |
|
|
| T |
4462064 |
attaaaaaagt |
4462074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 111 - 281
Target Start/End: Original strand, 4557907 - 4558077
Alignment:
| Q |
111 |
ctgctgcttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaat |
210 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||| || | |||||| |||||||||| ||||| ||||| ||||||| |||||| | ||| |||||||| |
|
|
| T |
4557907 |
ctgctgcttcaacgataaattctaccatcgaatcatttgtatctgtaatccttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaat |
4558006 |
T |
|
| Q |
211 |
ccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagtt |
281 |
Q |
| |
|
|| || |||||||||||||||||||| ||||| ||||||||||||||| ||| ||| | ||| ||||||| |
|
|
| T |
4558007 |
acaatccactttagtgtccaaatatccgtttgtcagataactctcatctacatgtcaaatttataaaagtt |
4558077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 4617886 - 4617980
Alignment:
| Q |
190 |
aaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagttaat |
284 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
4617886 |
aaagtttttcaaaccgggaatccaatctactttagtttccaaacatccatttgttagataactctcatctgcatatcataaggacgaaagttaat |
4617980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 280
Target Start/End: Complemental strand, 4489674 - 4489542
Alignment:
| Q |
148 |
aggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttaga |
247 |
Q |
| |
|
||||||| || ||||||| | |||||||| ||| |||| |||| | ||||||||||||||||||| || |||||||||||||||| ||||| ||||||| |
|
|
| T |
4489674 |
aggatcttttatccttattatatcaggaaaatccttcaaactaatgcttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttaga |
4489575 |
T |
|
| Q |
248 |
taactctcatctgcatatcataattacaaaagt |
280 |
Q |
| |
|
| |||||||||||||||||| |||| ||||||| |
|
|
| T |
4489574 |
ttactctcatctgcatatcacaatttcaaaagt |
4489542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 4470644 - 4470746
Alignment:
| Q |
170 |
tcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcata |
269 |
Q |
| |
|
||||||| ||| |||| ||| |||||||||||||||||||||||||| |||| | |||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
4470644 |
tcaggaaaatccttcaatctgaagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatcata |
4470743 |
T |
|
| Q |
270 |
att |
272 |
Q |
| |
|
||| |
|
|
| T |
4470744 |
att |
4470746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 72 - 293
Target Start/End: Original strand, 4626694 - 4626915
Alignment:
| Q |
72 |
aagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatc |
171 |
Q |
| |
|
|||| ||||||||||||| || ||||| |||||| ||||||| |||||||| | |||||||| | | ||| ||||||| ||||||||||||||| | |
|
|
| T |
4626694 |
aagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattaggatttgttgtccttataaagtt |
4626793 |
T |
|
| Q |
172 |
aggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataat |
271 |
Q |
| |
|
| |||| || ||||| | |||||| | ||| || ||||| || |||| ||| ||||| |||||||||||||| | |||| |||||||||| | ||||||| |
|
|
| T |
4626794 |
aagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataat |
4626893 |
T |
|
| Q |
272 |
tacaaaagttaatgtcttgaaa |
293 |
Q |
| |
|
|||| |||| ||| |||||||| |
|
|
| T |
4626894 |
tacacaagtcaatatcttgaaa |
4626915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 4586424 - 4586572
Alignment:
| Q |
117 |
cttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtc |
216 |
Q |
| |
|
||||||| ||||||||||| ||||||| || ||||| || |||||||||| ||||| | ||| || |||| |||||| | ||| |||||||| ||||| |
|
|
| T |
4586424 |
cttcaatgataaattctatgatcgaatcatttggatcagtaatccttataaagtcaggcaaatcctttagtcgaaagttctccaatcctggaatacagtc |
4586523 |
T |
|
| Q |
217 |
tactttagtgtccaaatatccatttgttagataactctcatctgcatat |
265 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
4586524 |
cactttagtgtccaaatatccgtttgtcagataactcttatctgcatat |
4586572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 273
Target Start/End: Complemental strand, 4299244 - 4299009
Alignment:
| Q |
38 |
agagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcc |
137 |
Q |
| |
|
|||||||||| |||| ||||||||||||| | ||||||| |||||||||| ||| ||| | |||||| ||||||| |||||||| |||||||| | |
|
|
| T |
4299244 |
agagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctgccgcttcaatggcaaattctacca |
4299145 |
T |
|
| Q |
138 |
tcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatcc |
237 |
Q |
| |
|
| ||| || |||| ||| |||||||||| |||| |||||||||| || |||||| | ||| |||||||| ||||||| ||| |||| |||||||| |
|
|
| T |
4299144 |
tgacatcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtctaaatatcc |
4299045 |
T |
|
| Q |
238 |
atttgttagataactctcatctgcatatcataatta |
273 |
Q |
| |
|
||||| | ||||||||||||||| | ||||||||| |
|
|
| T |
4299044 |
gtttgtcaaataactctcatctgcttgtcataatta |
4299009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 4564575 - 4564652
Alignment:
| Q |
190 |
aaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatca |
267 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
4564575 |
aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctgatctgcatatca |
4564652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 4568853 - 4568983
Alignment:
| Q |
146 |
ttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgtta |
245 |
Q |
| |
|
|||||||| || || |||||||||||| | || || || ||||||| |||| |||||||||||||||||| ||||||||| |||||||||||||||| | |
|
|
| T |
4568853 |
ttaggatcagtagttcttataaaatcaagcaggtcctttagtctaatgtttcgcaaacctggaatccagtcaactttagtgaccaaatatccatttgtca |
4568952 |
T |
|
| Q |
246 |
gataactctcatctgcatatcataattacaaaa |
278 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||| |
|
|
| T |
4568953 |
gataa--ctcatctgcatattataatcacaaaa |
4568983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 281
Target Start/End: Complemental strand, 4613120 - 4612898
Alignment:
| Q |
59 |
tcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcgaatcgttaggatctgttg |
158 |
Q |
| |
|
||||||||| |||||||||| |||| || || ||||||||| ||| | ||||||||||||| |||||| || | |||| || |||||||| |
|
|
| T |
4613120 |
tcaagttcattagaagtattaaaaataaaagcagaggctctgtgagcccttcctgctgcttcaattgtaaattgtactatgcaatcatttggatctgtaa |
4613021 |
T |
|
| Q |
159 |
tccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatc |
258 |
Q |
| |
|
|||||||| | | |||||||| ||||||| |||||| | ||| ||| |||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
4613020 |
tccttatatagccgggaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatc |
4612921 |
T |
|
| Q |
259 |
tgcatatcataattacaaaagtt |
281 |
Q |
| |
|
||||| ||| | ||||||||||| |
|
|
| T |
4612920 |
tgcatgtcaaatttacaaaagtt |
4612898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 4598990 - 4599106
Alignment:
| Q |
149 |
ggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagat |
248 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| |||||||| || || ||||| || ||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
4598990 |
ggatctgttatccctataaaatcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgtcagac |
4599089 |
T |
|
| Q |
249 |
aactctcatctgcatat |
265 |
Q |
| |
|
||| ||||||| |||| |
|
|
| T |
4599090 |
gactatcatctgtatat |
4599106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 280
Target Start/End: Complemental strand, 4256044 - 4255802
Alignment:
| Q |
38 |
agagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcc |
137 |
Q |
| |
|
|||||||||| |||| |||||||||||| || |||| || |||||||||| ||||||||||||||| || ||| |||||||| | |||||||| | |
|
|
| T |
4256044 |
agagcattcaatacatcgctctcaagttcattataagtgttaaaaacaatagcagaggctctatgaaaatgatttgccgcttcaatgaaaaattctacca |
4255945 |
T |
|
| Q |
138 |
tcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatcc |
237 |
Q |
| |
|
| ||||| || | ||||| |||||||||| ||||| | ||| || || | ||||| ||||| || |||| || |||||||| || |||| |||||| |
|
|
| T |
4255944 |
tagaatcattttggtctgtaatccttataaagtcaggtaaatcctttagccggaagttcttcaatccaggaacacaatctactttggtatccagatatcc |
4255845 |
T |
|
| Q |
238 |
atttgttagataactctcatctgcatatcataattacaaaagt |
280 |
Q |
| |
|
||| || || || |||| |||||| | |||||||||||||||| |
|
|
| T |
4255844 |
attcgtcaggtagctcttatctgcttgtcataattacaaaagt |
4255802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 4259425 - 4259335
Alignment:
| Q |
190 |
aaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagt |
280 |
Q |
| |
|
|||||| ||||| || |||| ||||||||||| || |||| |||||||||||||||||| |||| |||||| | |||||||||||||||| |
|
|
| T |
4259425 |
aaagttcttcaatccaggaacacagtctactttggtatccagatatccatttgttagatagctcttatctgcttgtcataattacaaaagt |
4259335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 4484231 - 4484150
Alignment:
| Q |
15 |
atagagaaggaaacataatatcaagagcat--tcagaacattactctcaagttcaatagaagtattgaaaacaatagaagag |
94 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||| |||||| |||||| || |||||||||||||| |||||||| |
|
|
| T |
4484231 |
atagagaaggaaacatagtatcaagagcatattcataacatcactctctagttcattaaaagtattgaaaacattagaagag |
4484150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 4580915 - 4580989
Alignment:
| Q |
203 |
cctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaa |
278 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||| |||||||| ||||||| | |||| |||||||||| |
|
|
| T |
4580915 |
cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctgtacatca-aattacaaaa |
4580989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 4503721 - 4503652
Alignment:
| Q |
209 |
atccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaa |
278 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||| |||||||||||||||||||| ||| || |||| ||||| |
|
|
| T |
4503721 |
atccagtcaactttactgtccaaatttccatctgttagataactctcatctgtataacacaattgcaaaa |
4503652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 4503809 - 4503732
Alignment:
| Q |
37 |
aagagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgc |
114 |
Q |
| |
|
||||||||||| | ||| ||||||||||||| ||||||||||||||||||| | |||||||| ||| || ||||||| |
|
|
| T |
4503809 |
aagagcattcatagcatcactctcaagttcattagaagtattgaaaacaatggctgaggctctttgacatttatctgc |
4503732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 278
Target Start/End: Original strand, 4622868 - 4623089
Alignment:
| Q |
57 |
tctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcgaatcgttaggatctgt |
156 |
Q |
| |
|
||||||||||| || ||||||| |||| ||||| ||||| | | |||||| ||||| |||||||| | |||||||| | | ||| || || ||||| |
|
|
| T |
4622868 |
tctcaagttcattataagtattaaaaataatagcagaggatttgtgaaatcgttctgccgcttcaatgagaaattctaccatgacatcatttggctctgt |
4622967 |
T |
|
| Q |
157 |
tgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctca |
256 |
Q |
| |
|
|||||||||| ||||| | ||| || | | |||||| ||||| || |||| |||||||||| ||||||| |||||||||||| ||||| |||| | |
|
|
| T |
4622968 |
aatccttataaagtcaggcaaatcctttaaccgaaagttcttcaatccaggaacacagtctacttcggtgtccagatatccatttgtcagatagctctta |
4623067 |
T |
|
| Q |
257 |
tctgcatatcataattacaaaa |
278 |
Q |
| |
|
||||| | ||||||| ||||| |
|
|
| T |
4623068 |
tctgcttggcataattgcaaaa |
4623089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 20863289 - 20863024
Alignment:
| Q |
15 |
atagagaaggaaacataatatcaagagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgc |
114 |
Q |
| |
|
|||||||||| |||||| || ||| |||||| ||||| ||||||||| ||| | |||||||||||||||||| ||||||||| |||||| ||||| | |
|
|
| T |
20863289 |
atagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctac |
20863190 |
T |
|
| Q |
115 |
tgcttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccag |
214 |
Q |
| |
|
| ||||||| | |||||||||| |||||| ||||||| |||||||||||| || | ||| || |||||||| || ||| |||||||||||||| |
|
|
| T |
20863189 |
tacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacctggaatccga |
20863090 |
T |
|
| Q |
215 |
tctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagt |
280 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
20863089 |
tcaactttagtctccaaatatccatttgttagataactctcatctgtatatcataactccaaaagt |
20863024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 265
Target Start/End: Complemental strand, 16685690 - 16685482
Alignment:
| Q |
57 |
tctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcgaatcgttaggatctgt |
156 |
Q |
| |
|
||||||||||| |||||||||| |||| || || || |||||||||| | ||||||||||||| |||||||||| | ||||||| || | ||| || |
|
|
| T |
16685690 |
tctcaagttcattagaagtattaaaaataaaagcagtggctctatgagcccttcctgctgcttcaattataaattctaacatcgaatcatttgtatcggt |
16685591 |
T |
|
| Q |
157 |
tgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctca |
256 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||| || || | ||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
16685590 |
aatccttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctca |
16685491 |
T |
|
| Q |
257 |
tctgcatat |
265 |
Q |
| |
|
||||||||| |
|
|
| T |
16685490 |
tctgcatat |
16685482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 1675091 - 1675169
Alignment:
| Q |
190 |
aaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcat |
268 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1675091 |
aaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttagatgtctctcatctgcatatcat |
1675169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 24103708 - 24103953
Alignment:
| Q |
38 |
agagcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcc |
137 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||| ||| || | | || |||| ||||||||| |||| |
|
|
| T |
24103708 |
agagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctctgtgacatcttaccgccacttcggtaataaattttatca |
24103807 |
T |
|
| Q |
138 |
tcgaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtct---actttagtgtccaaata |
234 |
Q |
| |
|
|| |||| ||||||||||| ||||| ||||||||||||| || |||| |||||||| | |||||||||||||| | | |||||| |||| ||||| |
|
|
| T |
24103808 |
tcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttatgcaaacctggaatcctgccaccaactttattgtctaaata |
24103907 |
T |
|
| Q |
235 |
tccatttgttagataactctcatctgcatatcataattacaaaagt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
24103908 |
tccatttgttagataactctcatctgcatattacaattgcaaaagt |
24103953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 3138 - 2894
Alignment:
| Q |
41 |
gcattcagaacattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcg |
140 |
Q |
| |
|
|||||||| |||| ||||||||||||| || |||| || |||||||| | ||| ||||| |||||| ||||||||||||||| | |||||||| | | |
|
|
| T |
3138 |
gcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccataa |
3039 |
T |
|
| Q |
141 |
aatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatt |
240 |
Q |
| |
|
|||| || ||||| |||| |||||||| |||||||| || || |||| ||||||||||| ||| ||||| || |||||||| |||||||||||||| | |
|
|
| T |
3038 |
aatcattcagatcttttgttcttataaagtcaggaaggtcctttagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccact |
2939 |
T |
|
| Q |
241 |
tgttagataactctcatctgcatatcataattaca-aaagttaat |
284 |
Q |
| |
|
||| | |||||| |||||||| | ||||||||||| ||||||||| |
|
|
| T |
2938 |
tgtcaaataactatcatctgcttgtcataattacagaaagttaat |
2894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 284
Target Start/End: Original strand, 1281838 - 1282071
Alignment:
| Q |
50 |
acattactctcaagttcaatagaagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcgaatcgttag |
149 |
Q |
| |
|
|||| ||||||||||||| | ||||||| |||| ||||| |||| |||||| || | ||||||| |||||||| ||||||| | | |||||| |
|
|
| T |
1281838 |
acatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaagaattctaacataatatcgtttc |
1281937 |
T |
|
| Q |
150 |
gatctgttgtccttataaaatcaggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagata |
249 |
Q |
| |
|
||||| ||||||| ||||| ||| || ||| |||| | || |||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
1281938 |
gatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttccaaatatccatttgttagata |
1282037 |
T |
|
| Q |
250 |
actctcatctgcatatcataattacaaaagttaat |
284 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
1282038 |
actctcatctgca-atcataagtacaaaagttaat |
1282071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 328 - 406
Alignment:
| Q |
190 |
aaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcat |
268 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
328 |
aaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttagatgtctctcatctgcatatcat |
406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 272
Target Start/End: Complemental strand, 4078 - 3878
Alignment:
| Q |
72 |
aagtattgaaaacaatagaagaggctctatgaaatgtatctgctgcttcaataataaattctatcctcgaatcgttaggatctgttgtccttataaaatc |
171 |
Q |
| |
|
|||| ||||||||||||| |||||| | || ||| ||||| | | |||||| ||||| | || ||| |||| || |||| ||||||||||| | || |
|
|
| T |
4078 |
aagtgttgaaaacaatagtcgaggctttgtggaatctatcttccgtttcaatgataaaatttaccctgaaatcatttggatttgttgtccttaatacgtc |
3979 |
T |
|
| Q |
172 |
aggaagatctttcagtctaaagtttttcaaacctggaatccagtctactttagtgtccaaatatccatttgttagataactctcatctgcatatcataat |
271 |
Q |
| |
|
|||| || ||||| | |||||| | ||| |||||||| | ||||||| || |||| |||||||||||||| | ||||||||| ||| | | ||||||| |
|
|
| T |
3978 |
gagaaggtccttcagccgaaagttctgcaatcctggaataccgtctactctattgtctaaatatccatttgtcaaataactctcgtctccttttcataat |
3879 |
T |
|
| Q |
272 |
t |
272 |
Q |
| |
|
| |
|
|
| T |
3878 |
t |
3878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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