View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10938_high_11 (Length: 228)
Name: NF10938_high_11
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10938_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 3604870 - 3604649
Alignment:
| Q |
7 |
atcaccggtatacaaactagaatccttatcatccaatccatctaaaatataaagtctcatataccatggtcctttcttactagttgagaagttggactca |
106 |
Q |
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| T |
3604870 |
atcaccagtatataaactagaatccttatcatccaatccatctaaaatataaagtctcatataccatggtcctttcttactagttgagaagttggactca |
3604771 |
T |
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| Q |
107 |
ctcgttgtgtttgaaggggcttatttaacttattagattgtcttgtgataaattacatgtttatcatatttataagaagatgtctttgaaacaaagatta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3604770 |
ctcgttgtgtttgaaggggcttatttaacttattagattgtcttgtgataaattacatgtttatcatatttataagaagatgtctttgtttcaaagatta |
3604671 |
T |
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| Q |
207 |
aatttacgattatatcaatatt |
228 |
Q |
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| T |
3604670 |
aatttacgattatgtcgatatt |
3604649 |
T |
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