View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10938_high_3 (Length: 436)
Name: NF10938_high_3
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10938_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 8925959 - 8925533
Alignment:
| Q |
1 |
ttaagaatggaaaaactatttatttaattaacaaaagtattgtattattgtcacaaattctaatgtgtatatatgcatcaagaggataattcttacaaat |
100 |
Q |
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| T |
8925959 |
ttaagaatggaaaaactatttatttaattaacaaaagtattgtattattgtcacaaattctaatgtgtatatatgcatcaagaggataattcttacaaat |
8925860 |
T |
|
| Q |
101 |
taatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgacttagtataaaataaaataattcttacatatatttgatgcctataaatg |
200 |
Q |
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| T |
8925859 |
taatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgatttagtataaaataaaataattcttacatatatttgatgcctataaatg |
8925760 |
T |
|
| Q |
201 |
actggatttagttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgttcat--aaacaattataaagaaacaa |
298 |
Q |
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| T |
8925759 |
actggattttgttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgtccataaaaacaattataaagaaacaa |
8925660 |
T |
|
| Q |
299 |
ataatgttttttattataaaatatatcatgcaattcattaatcatattaaatattttttccacctatgtagtccaacttaactaaagagataagtctttg |
398 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8925659 |
ataatgttttttattataaaatatatcatgcaatacattaatcatattaaatattttttccacctatgtagtccgacttaactaaagagataagtctttg |
8925560 |
T |
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| Q |
399 |
taattgtccgcatgtcatccagttcat |
425 |
Q |
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|| |||||||||||||||||||||||| |
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| T |
8925559 |
tagttgtccgcatgtcatccagttcat |
8925533 |
T |
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