View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10938_high_4 (Length: 435)
Name: NF10938_high_4
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10938_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 35049419 - 35049827
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35049419 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
35049518 |
T |
|
| Q |
101 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35049519 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcac |
35049618 |
T |
|
| Q |
201 |
caaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35049619 |
caaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaa |
35049718 |
T |
|
| Q |
301 |
aaagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgatttcatg |
400 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35049719 |
aaaggttccggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgatttcatg |
35049818 |
T |
|
| Q |
401 |
gagaagtgg |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
35049819 |
gagaagtgg |
35049827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 54077900 - 54077492
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
54077900 |
ttatgagtattttggtgaagtaataacctttgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaatcatcatggt |
54077801 |
T |
|
| Q |
101 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcac |
200 |
Q |
| |
|
|| ||| || |||||||||| |||||||||||||| |||||| | | ||| ||||| |||||||||| || ||||||||||| |||| ||| ||||||| |
|
|
| T |
54077800 |
cagtcaattctgttaggttgcgccctattgtcgaaggaggattctataactttttcttggttgttcactacttggttagaatgtatgcgtgggcgtgcac |
54077701 |
T |
|
| Q |
201 |
caaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaa |
300 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||| |
|
|
| T |
54077700 |
cacaagccataattactgaccaagatagagcaatgaaaaatgcagttgaggacgtcttcccaaaagctcgccatcggtggtgcttgtggcatataatgaa |
54077601 |
T |
|
| Q |
301 |
aaagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgatttcatg |
400 |
Q |
| |
|
|||| ||| ||||| ||| |||||| ||| | ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
54077600 |
aaaggttccagaaaaattgagtagactctctaactatgagtctatcaaaatacttttgcatgatgcggtgtatgattctttgagcataagtgatttcatg |
54077501 |
T |
|
| Q |
401 |
gagaagtgg |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
54077500 |
gagaagtgg |
54077492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 20007272 - 20007105
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20007272 |
ttatgagtattttggtgaaatcataacttttgataccacttatttaacaaataaatatgacatgccttttgccccttttgttggagtcaatcatcacagt |
20007173 |
T |
|
| Q |
101 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaa |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
20007172 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcttggctgttcaa |
20007105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 20660350 - 20660593
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| |||||||| || ||||||||||||| |||| |||||||||| ||||||||||||| ||| |||||||||||| | |||||||| ||| |
|
|
| T |
20660350 |
tatgaatattttggcgacgtcataacttttggcgccac----ttaacaaatagatatgacatgccttctgctccttttgttggactaaatcatcatagtc |
20660445 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
|||| | ||||| |||||||| |||||||| ||||||||||| ||||| ||| | |||||||||| |||||| ||| |||| |||||||||||||| | |
|
|
| T |
20660446 |
aatctatgttgttgggttgtgctctattgtcaaatgaggatactaaaacttttacttggttgttcacaacatgtttaaaatgtatgcatggacgtgcttc |
20660545 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattga |
249 |
Q |
| |
|
|||||||||||||||| | ||||| | |||||||||||| | |||||| |
|
|
| T |
20660546 |
aaatgccataattacttatcaagacatagcaatgaagaatgaaattga |
20660593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 53227544 - 53227253
Alignment:
| Q |
14 |
ggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtcaatcagttttgt |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||||| ||| ||||||| ||||||||| |||| || |||| ||||||| | |||| |
|
|
| T |
53227544 |
ggtgaagtcataacttttgacaccacttatttaaataataaatatgatatgtcttttgctccttttgttagagtgaaccatcgtagtcaatctatgttgt |
53227445 |
T |
|
| Q |
114 |
taggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcaccaaatgccataat |
213 |
Q |
| |
|
| | |||||| | ||||||||||||||||| ||||| ||| | |||||||||| ||| ||| ||||||| |||||||| ||||| ||||||||||| || |
|
|
| T |
53227444 |
tggattgtgctttgttgtcgaatgaggatactaaaacttttacatggttgttcataacttggatagaatgtatgcatggtcgtgctccaaatgccattat |
53227345 |
T |
|
| Q |
214 |
tactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgat--ggtgtttgtggcatttaatgaaaaa |
303 |
Q |
| |
|
|||| | || |||| |||||| | ||| ||||||||| |||||||| ||||||| || |||| ||| || ||||||||||||||||| |
|
|
| T |
53227344 |
tacttatcaggataaagcaataaggaatgcaattgagattgtctttccgaaagctcatcgccgatagagtgcttatggcatttaatgaaaaa |
53227253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 41699050 - 41699458
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
41699050 |
ttatgagtattttggtgaagtaataacctttgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaatcatcatggt |
41699149 |
T |
|
| Q |
101 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcac |
200 |
Q |
| |
|
|| ||| || |||||||||| |||||||||||||| |||||| | | ||| ||||| |||||||||| || ||||||||||| |||| ||| ||||||| |
|
|
| T |
41699150 |
cagtcaattctgttaggttgcgccctattgtcgaaggaggattctataactttttcttggttgttcactacttggttagaatgtatgcgtgggcgtgcac |
41699249 |
T |
|
| Q |
201 |
caaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaa |
300 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||| |
|
|
| T |
41699250 |
cacaagccataattactgaccaagatagagcaatgaaaaatgcagttgaggacgtcttcccaaaagctcgccatcggtggtgcttgtggcatataatgaa |
41699349 |
T |
|
| Q |
301 |
aaagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgatttcatg |
400 |
Q |
| |
|
|||| ||| ||||| ||| |||||| ||| | ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
41699350 |
aaaggttccagaaaaattgagtagactctctaactatgagtctatcaaaatacttttgcatgatgcggtgtatgattctttgagcataagtgatttcatg |
41699449 |
T |
|
| Q |
401 |
gagaagtgg |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
41699450 |
gagaagtgg |
41699458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 41704644 - 41705052
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
41704644 |
ttatgagtattttggtgaagtaataacctttgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaatcatcatggt |
41704743 |
T |
|
| Q |
101 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcac |
200 |
Q |
| |
|
|| ||| || |||||||||| |||||||||||||| |||||| | | ||| ||||| |||||||||| || ||||||||||| |||| ||| ||||||| |
|
|
| T |
41704744 |
cagtcaattctgttaggttgcgccctattgtcgaaggaggattctataactttttcttggttgttcactacttggttagaatgtatgcgtgggcgtgcac |
41704843 |
T |
|
| Q |
201 |
caaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaa |
300 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||| |
|
|
| T |
41704844 |
cacaagccataattactgaccaagatagagcaatgaaaaatgcagttgaggacgtcttcccaaaagctcgccatcggtggtgcttgtggcatataatgaa |
41704943 |
T |
|
| Q |
301 |
aaagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgatttcatg |
400 |
Q |
| |
|
|||| ||| ||||| ||| |||||| ||| | ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
41704944 |
aaaggttccagaaaaattgagtagactctctaactatgagtctatcaaaatacttttgcatgatgcggtgtatgattctttgagcataagtgatttcatg |
41705043 |
T |
|
| Q |
401 |
gagaagtgg |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
41705044 |
gagaagtgg |
41705052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 24355723 - 24356085
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| |||||||| ||||||||| |||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || || ||||| |||| |
|
|
| T |
24355723 |
tatgaatattttggcgaagtcatatctttcgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggtgtaaaccatcatggtc |
24355822 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| || | ||| |||||||||| || ||||| ||||||||||| |||| ||| | |||||||| || || ||||||||||| ||||||| |||| | || |
|
|
| T |
24355823 |
agtcgatgttgctaggttgtgctctgttgtcaaatgaggatactgaaacttttacttggttgtttaagacttggttagaatgtatgcatgaacgttctcc |
24355922 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
24355923 |
aaatgccataatcactgatcaagacggagcaatgaaaaaggcaattgaggttgtctttccgaaggctcgtcatcggtggtgcttatggcatttaatgaaa |
24356022 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgat |
364 |
Q |
| |
|
||||||| |||||||| |||||||| ||| | || |||||||||||| ||||||||||||| |
|
|
| T |
24356023 |
aagattccagaaaagtttggtagacactctgactacgagtctatcaaaacacttttgcatgat |
24356085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 24343345 - 24343707
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| |||||||| ||||||||| |||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
24343345 |
tatgaatattttggcgaagtcatatctttcgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaaccatcatggtc |
24343444 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| || | ||| | |||||||| || ||||| |||||| |||| |||| ||| | |||||||| || || ||||||||||| ||||||| |||| | || |
|
|
| T |
24343445 |
agtcgatgttgctgggttgtgctctgttgtcaaatgagaatactgaaacttttacttggttgtttaagacttggttagaatgtatgcatgaacgttctcc |
24343544 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
24343545 |
aaatgccataatcactgatcaagacggagcaatgaaaaaggcaattgaggttgtctttccgaaggctcgtcatcggtggtgcttatggcatttaatgaaa |
24343644 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgat |
364 |
Q |
| |
|
||||||| |||||||| |||||||| ||| | || |||||||||||| ||||||||||||| |
|
|
| T |
24343645 |
aagattccagaaaagtttggtagacactctgactacgagtctatcaaaacacttttgcatgat |
24343707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 14123094 - 14123261
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14123094 |
ttatgagtattttggtgaaatcataacttttgataccacttatttaacaaataaatatgacatgccttttgccccttttgttggagtcaatcatcacagt |
14123193 |
T |
|
| Q |
101 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaa |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
14123194 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacggaaaccttttcttggctgttcaa |
14123261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 2 - 409
Target Start/End: Original strand, 40249205 - 40249612
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| || | ||| ||||||||||| || ||||| |||| |
|
|
| T |
40249205 |
tatgaatattttggtgaagtcataactttggataccacttatttaacaagtaagtatgacttgccattggtcccctttgttggagtgaaccatcatggtc |
40249304 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| | |||| || || ||||| |||||||||| |||| | ||||| || |||||||||||| || |||||||||||| ||||| |||| ||| || |
|
|
| T |
40249305 |
agactattttattggggtgtgcaatattgtcgaacctggatgctaaaactcttacctggttgttcacaagatggttagaatgtatgcacggacatgctcc |
40249404 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
||||| |||||||||||| | |||| ||||||||| || |||||||||| | |||||| |||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
40249405 |
aaatggcataattactgaagaggataaagcaatgaaaaatgcaattgaggttgcctttcctaaagctcgtcatcgatggtgcttgtggcatataatgaag |
40249504 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgatttcatgg |
401 |
Q |
| |
|
||| ||| |||| |||||||| | | || | | |||||||||||||| ||||||||| |||| || ||||| ||| ||||| | ||||||||||| |
|
|
| T |
40249505 |
aaggttccagaaatgttgggtaaatactcccgtaatgagtctatcaaaacacttttgcaggatgtggtatatgactctatgagcaaaagtgatttcatgg |
40249604 |
T |
|
| Q |
402 |
agaagtgg |
409 |
Q |
| |
|
||| |||| |
|
|
| T |
40249605 |
agaggtgg |
40249612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 49244832 - 49245227
Alignment:
| Q |
14 |
ggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtcaatcagttttgt |
113 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||| | |||| |
|
|
| T |
49244832 |
ggtgaagtcgcaacttttgacaccacttatttagcaaataaacatgacaggccttttgccccttttgttggagtaaatcaccacggtcaatctatgttgt |
49244931 |
T |
|
| Q |
114 |
taggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcaccaaatgccataat |
213 |
Q |
| |
|
| |||||||| || || || ||||||||| | |||| ||| | ||||| |||| |||||||||||||||||| |||||| | ||||||||||| || |
|
|
| T |
49244932 |
tgggttgtgcactcttatcaaatgaggatgctaaaaaatttacttggttattcaccacatggttagaatgcatgtatggacacactccaaatgccattat |
49245031 |
T |
|
| Q |
214 |
tactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaaaagattctggaa |
313 |
Q |
| |
|
|||||| || |||| |||||||| ||||| ||||||| ||||| |||||| |||||| ||||||| || |||||||||||||||||| | | ||| |
|
|
| T |
49245032 |
tactgatcaggataaggcaatgaaaaaggcgattgaggttgtcttcccaaaattccgtcatagatggtgcttatggcatttaatgaaaaaggtacctgaa |
49245131 |
T |
|
| Q |
314 |
aagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgatttcatggagaagtgg |
409 |
Q |
| |
|
||||| |||| | | || | ||||||||||| ||| || ||||||||||| ||| |||||||||| ||||| | ||||||||| |||| |||| |
|
|
| T |
49245132 |
aagtttggtaaatactcagaatatgagtctattaaagcacgtttgcatgatgttgtatatgattctttgagcaaaagtgatttcatagagatgtgg |
49245227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 5403958 - 5404081
Alignment:
| Q |
180 |
aatgcatgcatggacgtgcaccaaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatg |
279 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||| ||| ||||||| | || || || ||||||||||| || |||| |||||||| ||||| ||| |
|
|
| T |
5403958 |
aatgcatgcatggacgtacctcaagtgccataattattgatcaagataaaaacataaaaaatgcaattgaggatgtttttcgaaaagctcatcatcaatg |
5404057 |
T |
|
| Q |
280 |
gtgtttgtggcatttaatgaaaaa |
303 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
5404058 |
gtgtttgtgacatttaatgaaaaa |
5404081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 53324764 - 53324486
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
53324764 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataaatatgacatgccttttgtcctttttgttggagtcaatcatcacggt |
53324665 |
T |
|
| Q |
101 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcac |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53324664 |
caatcagttttgttaggttgtgctctattgtcaagtgaggatacggaaaccttttcttggctgttcaaaacatggttagaatgcatgcatggacatgcac |
53324565 |
T |
|
| Q |
201 |
caaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatg |
279 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
53324564 |
caaatgccataattactgatcaagatagagcaatgaagaaggcaattgaggttgtctttccggaagctcgccatcgatg |
53324486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 2 - 380
Target Start/End: Original strand, 49960450 - 49960828
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
49960450 |
tatgaatattttggtgaagtcataactttcgacaccacttatttaacaaataaatatgacatgccttttgttccttttgttggcgtaaatcatcacggtc |
49960549 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| || | ||||| |||||||| || ||||| ||||||||||| |||| ||| | |||||||| || |||||||||||||| |||||||||||| | || |
|
|
| T |
49960550 |
agtctatgttgttgggttgtgctctgttgtcaaatgaggatactgaaacttttacttggttgtttaagacatggttagaatgtatgcatggacgttctcc |
49960649 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||||| || || ||| |||||||| |
|
|
| T |
49960650 |
aaatgccataactactgatcaagacagagcaatgaagaatgcaattgagattgtctttccgaaagctcgtcatcgatggtgcttatgacatataatgaaa |
49960749 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattctt |
380 |
Q |
| |
|
|||||| |||||||| ||||| || ||| | || |||||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
49960750 |
aagatttcagaaaagtttggtagtcactctgactacgagtctatcaaaacacttttgcatgatattgtatatgattctt |
49960828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 413868 - 414230
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| |||||||| ||||||||| |||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
413868 |
tatgaatattttggcgaagtcatatctttcgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaaccatcatggtc |
413967 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| || | ||| | |||||||| || ||||| |||||| |||| |||| ||| | |||||||| || || ||||||||||| ||||||| |||| | || |
|
|
| T |
413968 |
agtcgatgttgctgggttgtgctctgttgtcaaatgagaatactgaaacttttacttggttgtttaagacttggttagaatgtatgcatgaacgttctcc |
414067 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
414068 |
aaatgccataatcactgatcaagacggagcaatgaaaaaggcaattgaggttgtctttccgaaggctcgtcatcggtggtgcttatggcatttaatgaaa |
414167 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgat |
364 |
Q |
| |
|
||||||| |||||||| |||||||| ||| | || |||||||||||| ||||||||||||| |
|
|
| T |
414168 |
aagattccagaaaagtttggtagacactctgactacgagtctatcaaaacacttttgcatgat |
414230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 364
Target Start/End: Complemental strand, 412155 - 411793
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| |||||||| ||||||||| |||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
412155 |
tatgaatattttggcgaagtcatatctttcgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaaccatcatggtc |
412056 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| || | ||| | |||||||| || ||||| |||||| |||| |||| ||| | |||||||| || || ||||||||||| ||||||| |||| | || |
|
|
| T |
412055 |
agtcgatgttgctgggttgtgctctgttgtcaaatgagaatactgaaacttttacttggttgtttaagacttggttagaatgtatgcatgaacgttctcc |
411956 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
||||| |||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
411955 |
aaatgtcataatcactgatcaagacggagcaatgaaaaaggcaattgaggttgtctttccgaaggctcgtcatcggtggtgcttatggcatttaatgaaa |
411856 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgat |
364 |
Q |
| |
|
||||||| |||||||| |||| ||| ||| | || |||||||||||| ||||||||||||| |
|
|
| T |
411855 |
aagattccagaaaagtttggtaaacactctgactacgagtctatcaaaacacttttgcatgat |
411793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 26301527 - 26301635
Alignment:
| Q |
11 |
tttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtcaatcagttt |
110 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||| ||||| ||| |||||| ||||||||||||||| ||||||||||| ||||| || | |
|
|
| T |
26301527 |
tttggtgaagtcataacttttgacatcacttatttaacaaataaatatgatatggcttttgacccttttgttggagtaaatcatcacggccaatctgtgt |
26301626 |
T |
|
| Q |
111 |
tgttaggtt |
119 |
Q |
| |
|
|||| |||| |
|
|
| T |
26301627 |
tgttgggtt |
26301635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 304
Target Start/End: Original strand, 26301646 - 26301777
Alignment:
| Q |
173 |
tggttagaatgcatgcatggacgtgcaccaaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtc |
272 |
Q |
| |
|
||||||||||||||| ||| ||| | | ||||||||| |||||||| || |||| |||||||| ||||||||||| | ||||| |||||||| |||| |
|
|
| T |
26301646 |
tggttagaatgcatgtatgtacgcactcaaaatgccattattactgatcaggataaggcaatgaaaaaggcaattgaagttgtcttcccaaaagcccgtc |
26301745 |
T |
|
| Q |
273 |
atcgatggtgtttgtggcatttaatgaaaaag |
304 |
Q |
| |
|
|| ||||||| || |||||||||||||||||| |
|
|
| T |
26301746 |
atagatggtgcttatggcatttaatgaaaaag |
26301777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 23557334 - 23557741
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
23557334 |
ttatgagtattttggtgaagtaataaccattgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaatcatcatggt |
23557433 |
T |
|
| Q |
101 |
caatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcac |
200 |
Q |
| |
|
|| ||| || |||||||||| |||||||||||||| |||||||| ||||| ||||| |||||||||| || |||||||||| |||| ||| ||||||| |
|
|
| T |
23557434 |
cagtcaattctgttaggttgcgccctattgtcgaaggaggatactaaaactttttcttggttgttcactactaggttagaatgtatgcgtgggcgtgcac |
23557533 |
T |
|
| Q |
201 |
caaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaa |
300 |
Q |
| |
|
|| | |||||||||||||||| ||||||||||||||| || ||| ||||||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||| |
|
|
| T |
23557534 |
cacaagccataattactgacc-agatagagcaatgaaaaatgcagttgaggacgtcttcccaaaagctcgccatcggtggtgcttgtggcatataatgaa |
23557632 |
T |
|
| Q |
301 |
aaagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgatttcatg |
400 |
Q |
| |
|
|||| ||| ||||| ||| |||||| ||| | ||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
23557633 |
aaaggttccagaaaaattgagtagactctctaactatgattctatcaaaatacttttgcatgatgcggtgtatgattctttgagcataagtgatttcatg |
23557732 |
T |
|
| Q |
401 |
gagaagtgg |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
23557733 |
gagaagtgg |
23557741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 3 - 299
Target Start/End: Complemental strand, 9284299 - 9284000
Alignment:
| Q |
3 |
atgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgcccc-ttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| | | ||| |||||||||||| |||||||||| ||||||||| |||||||||||| |||| |||| |
|
|
| T |
9284299 |
atgaatattttggtgaattcataacttttgacatcgcttgtttaacaaataaatatgacatgcattttgcccccttttgttggagtagtaaatcatggtc |
9284200 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
||| | ||||||||||||||| ||||||||||||||||||||| |||| |||||| ||| ||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
9284199 |
aataatttttgttaggttgtgtcctattgtcgaatgaggatactaaaatcttttcttggccgttcacaacatggttagaatgtatgcatgagtgtgcacc |
9284100 |
T |
|
| Q |
202 |
aaatgccataattactgaccaag--atagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatga |
299 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| ||||||| | |||||| |||| || || ||||||||||||||||||||||||| |
|
|
| T |
9284099 |
aaatgccataattattgaccaagatatagagcaatgaagaatacaattgaagttgtcttttttaaaggtcaccagcgatggtgtttgtggcatttaatga |
9284000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 265 - 408
Target Start/End: Complemental strand, 17832095 - 17831952
Alignment:
| Q |
265 |
agctcgtcatcgatggtgtttgtggcatttaatgaaaaagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgat |
364 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||||||| || ||||||||||||| |||| | | ||||| |||||||||||||||||||| ||||| |
|
|
| T |
17832095 |
agctcgccatcgatggtgcttgtgacatttaatgaaaaaggttatggaaaagttgggcagactctttgattatcagtctatcaaattacttttgtatgat |
17831996 |
T |
|
| Q |
365 |
gctgtgtatgattcttcgagcatatctgatttcatggagaagtg |
408 |
Q |
| |
|
| | |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
17831995 |
gttatgtatgattcgtcgagcatatttgatttcatggagaagtg |
17831952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 37603739 - 37603634
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
||||||||||||||| || || ||||||| ||||| || ||| | ||||||| ||||| ||||||||||| ||||||||| || ||||| || ||| |
|
|
| T |
37603739 |
ttatgagtattttggagatgtagtaactttcgatacaacatatctgacaaatagatatgatatgccttttgctgtttttgttggtgtgaatcaccatggt |
37603640 |
T |
|
| Q |
101 |
caatca |
106 |
Q |
| |
|
|||||| |
|
|
| T |
37603639 |
caatca |
37603634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 38777433 - 38777538
Alignment:
| Q |
1 |
ttatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggt |
100 |
Q |
| |
|
||||||||||||||| || || ||||||| || || || ||||| || ||||||| ||||||||||||||| | ||||| || || ||||| || ||| |
|
|
| T |
38777433 |
ttatgagtattttggagatgttgtaactttcgacacaacatatttgaccaataagtttgacatgccttttgctacatttgtaggtgtgaatcaccatggt |
38777532 |
T |
|
| Q |
101 |
caatca |
106 |
Q |
| |
|
|||||| |
|
|
| T |
38777533 |
caatca |
38777538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 15049377 - 15048999
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
15049377 |
tatgaatattttggtgaagtcataactttcgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaatcatcacggtc |
15049278 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| || | ||||| |||||||| || || || ||||||||||| |||| ||| | ||||| || || |||||||| ||||| ||||||||| || | || |
|
|
| T |
15049277 |
agtctatgttgttgggttgtgctctgttatcaaatgaggatactgaaacttttacttggttatttaagacatggttggaatgtatgcatggaagttctcc |
15049178 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||| ||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
15049177 |
aaatgccataatcactgatcaagacagagcaatgaagaatgcaattgagattgtctttccgaaagctcgtcatcggtggtgcttatggcatttaatgaaa |
15049078 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattctt |
380 |
Q |
| |
|
||||||| |||||||| ||||| || ||| | || |||||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
15049077 |
aagattccagaaaagtttggtagtcactctgactacgagtctatcaaaacacttttgcatgatattgtatatgattctt |
15048999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 15230326 - 15229966
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| ||||| || |||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15230326 |
tatgaatatttcggcgaagtcataactttcgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtcaatcatca----- |
15230232 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
|||||| |||||||| || ||||| |||||||||| || ||| | |||||||| | |||||||||||||| ||||||| | || | || |
|
|
| T |
15230231 |
-------tttgttgggttgtgctctgttgtcaaatgaggata-----acttttacttggttgtttcagacatggttagaatgtatgcatgaatgttctcc |
15230144 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
|||||| ||||| | ||| |||| |||||||||||||| ||||||||| |||||||| || |||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
15230143 |
aaatgcaataatcattgataaagacagagcaatgaagaatgcaattgagattgtctttccgaaggctcgtcatcagtggtatttatggcatttaatgaaa |
15230044 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattctt |
380 |
Q |
| |
|
|| |||| |||||||| || ||||| ||| | || |||||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
15230043 |
aa-attccagaaaagttaggcagacactctgactacgagtctatcaaaacacttttgcatgatattgtatatgattctt |
15229966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 7e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 20788826 - 20788448
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
20788826 |
tatgaatattttggtgaagtcataactttcgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaatcatcacggtc |
20788727 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| || | ||||| |||||||| || ||||| || |||||||| |||| ||| | ||||| || || | |||||| ||||| ||||||||| || | || |
|
|
| T |
20788726 |
agtctatgttgttgggttgtgctctgttgtcaaacgaggatactgaaacttttccttggttatttaagatatggttggaatgtatgcatggaagttctcc |
20788627 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
||||| |||||| ||||| ||||| |||||||||||||| ||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
20788626 |
aaatgacataatcactgatcaagacagagcaatgaagaatgcaattgagattgtctttccgaaagctcgtcatcggtggtgcttatggcatttaatgaaa |
20788527 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattctt |
380 |
Q |
| |
|
|||||||| |||||||| ||||| || ||| | || |||||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
20788526 |
aagattctagaaaagtttggtagccactctgactacgagtctatcaaaacacttttgcatgatattgtatatgattctt |
20788448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 2 - 386
Target Start/End: Complemental strand, 8534217 - 8533833
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| || |||||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
8534217 |
tatgaatactttggtgaagtcgtaacttttgacaccacttatttaacaaacaaatatgacatgccttttgctccttttgttggagtaaatcatcacggtc |
8534118 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
|||| || ||||| |||||||| || || || || |||||| | ||||| ||| | ||||| |||| || ||||||||||||||||||||||| || || |
|
|
| T |
8534117 |
aatctgtattgttgggttgtgcactcttatcaaaagaggatgctaaaacttttacttggttattcaccacgtggttagaatgcatgcatggacgcgctcc |
8534018 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
||||||||| |||||||| || |||| |||||||| ||||| ||||||| ||||| |||||||| |||||| ||||||| || ||||||||||||||| |
|
|
| T |
8534017 |
aaatgccattattactgatcaggataaggcaatgaaaaaggcgattgaggttgtcttcccaaaagcccgtcatagatggtgcttatggcatttaatgaaa |
8533918 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagca |
386 |
Q |
| |
|
||| | | |||||||| |||| | | || | ||||||||||| ||| ||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
8533917 |
aaggtacctgaaaagtttggtaaatactcagaatatgagtctattaaagaacttttgcatgctgctgtatatgattctttgagca |
8533833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 2 - 364
Target Start/End: Complemental strand, 24186559 - 24186197
Alignment:
| Q |
2 |
tatgagtattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtc |
101 |
Q |
| |
|
||||| |||||||| ||||||||| |||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
24186559 |
tatgaatattttggcgaagtcatatctttcgacaccacttacttaacaaataaatatgacatgccttttgctccttttgttggagtaaaccatcatggtc |
24186460 |
T |
|
| Q |
102 |
aatcagttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcacc |
201 |
Q |
| |
|
| || | ||| | |||||||| || || || |||||| |||| |||| ||| | |||||||| || || ||||||||||| ||||||| |||| | || |
|
|
| T |
24186459 |
agtcgatgttgctgggttgtgctctgttatcaaatgagaatactgaaacttttacttggttgtttaagacttggttagaatgtatgcatgaacgttctcc |
24186360 |
T |
|
| Q |
202 |
aaatgccataattactgaccaagatagagcaatgaagaaggcaattgaggacgtctttccaaaagctcgtcatcgatggtgtttgtggcatttaatgaaa |
301 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
24186359 |
aaatgccataatcactgatcaagacggagcaatgaaaaaggcaattgaggttgtctttccgaaggctcgtcatcggtggtgcttatggcatttaatgaaa |
24186260 |
T |
|
| Q |
302 |
aagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgat |
364 |
Q |
| |
|
||||||| |||||||| |||||||| ||| | || |||||||||||| ||||||||||||| |
|
|
| T |
24186259 |
aagattccagaaaagtttggtagacactctgactacgagtctatcaaaacacttttgcatgat |
24186197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 33525809 - 33525603
Alignment:
| Q |
8 |
tattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgccttttgccccttttgttggagtcaatcatcacggtcaatcag |
107 |
Q |
| |
|
|||||| || ||||||| ||||| || ||||| || ||||| | || |||||||| ||||||| | |||||||||||| |||||||| ||||||| |
|
|
| T |
33525809 |
tatttttgtcaagtcattactttcgacaccacatacttaactactatatatgacattccttttgtcgtttttgttggagtaaatcatcatggtcaat--- |
33525713 |
T |
|
| Q |
108 |
ttttgttaggttgtgccctattgtcgaatgaggatacgaaaaccttttcctggttgttcaaaacatggttagaatgcatgcatggacgtgcaccaaatgc |
207 |
Q |
| |
|
|| |||||| |||||| ||||||| ||||| |||| || | ||| | ||||||||||||||||||||||| || ||||||| |||||| | ||||| |
|
|
| T |
33525712 |
ttgtgttagattgtgctttattgtcaaatgaagataattaagcttttacttggttgttcaaaacatggttagagtgtatgcatgaacgtgctctaaatgt |
33525613 |
T |
|
| Q |
208 |
cataattact |
217 |
Q |
| |
|
|||||||||| |
|
|
| T |
33525612 |
cataattact |
33525603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 33524023 - 33524085
Alignment:
| Q |
8 |
tattttggtgaagtcataacttttgataccacttatttaacaaataagtatgacatgcctttt |
70 |
Q |
| |
|
|||||||||||| || | |||||||||||||| || ||| ||||||||||||||| |||||| |
|
|
| T |
33524023 |
tattttggtgaaatcgttacttttgataccacataactaagaaataagtatgacattcctttt |
33524085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 13388086 - 13388196
Alignment:
| Q |
295 |
aatgaaaaagattctggaaaagttgggtagacattctcattatgagtctatcaaattacttttgcatgatgctgtgtatgattcttcgagcatatctgat |
394 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
13388086 |
aatgaaaaaggttccggaaaagttgggtagactctctgattatgagtctatcaaattatttttgcatgatggtgtgtatgattcatcaagcatatctgat |
13388185 |
T |
|
| Q |
395 |
ttcatggagaa |
405 |
Q |
| |
|
||||||||||| |
|
|
| T |
13388186 |
ttcatggagaa |
13388196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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