View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10938_high_5 (Length: 361)

Name: NF10938_high_5
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10938_high_5
NF10938_high_5
[»] chr5 (2 HSPs)
chr5 (205-263)||(32108009-32108068)
chr5 (215-263)||(12237025-12237073)
[»] chr1 (2 HSPs)
chr1 (213-267)||(7010054-7010108)
chr1 (208-241)||(328548-328581)
[»] chr8 (1 HSPs)
chr8 (209-269)||(40464556-40464616)
[»] chr3 (1 HSPs)
chr3 (208-240)||(42313976-42314008)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 32108009 - 32108068
Alignment:
Q  205 tctctccgtccctttttataagactacttta-taaaaaagttgtgtccctatatataaga 263  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||    
T  32108009 tctctccgtccctttttataagactactttacaaaaaaagttttgtccctaaatataaga 32108068  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 12237025 - 12237073
Alignment:
Q  215 cctttttataagactactttataaaaaagttgtgtccctatatataaga 263  Q
    |||||||| |||||||||||||||||||||| ||||  || ||||||||    
T  12237025 cctttttacaagactactttataaaaaagttttgtcgttaaatataaga 12237073  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 7010054 - 7010108
Alignment:
Q  213 tccctttttataagactactttataaaaaagttgtgtccctatatataagactat 267  Q
    ||||||||||| ||||||||||| |||||| |||||||| || ||||||||||||    
T  7010054 tccctttttatgagactactttacaaaaaaattgtgtccataaatataagactat 7010108  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 328581 - 328548
Alignment:
Q  208 ctccgtccctttttataagactactttataaaaa 241  Q
    |||||||||||||||||||||||||||| |||||    
T  328581 ctccgtccctttttataagactactttacaaaaa 328548  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 40464556 - 40464616
Alignment:
Q  209 tccgtccctttttataagactactttataaaaaagttgtgtccctatatataagactattt 269  Q
    |||||||||||||||| ||| ||| || ||||||||| |||||| | || |||||||||||    
T  40464556 tccgtccctttttatacgaccactatacaaaaaagttttgtcccaaaatctaagactattt 40464616  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 42313976 - 42314008
Alignment:
Q  208 ctccgtccctttttataagactactttataaaa 240  Q
    |||||||||||||||||||||||||||| ||||    
T  42313976 ctccgtccctttttataagactactttacaaaa 42314008  T

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