View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10938_low_1 (Length: 700)
Name: NF10938_low_1
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10938_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Original strand, 14047951 - 14048442
Alignment:
| Q |
15 |
accaacattaataaaatttccacaaaaataactatttcatcacattttccattcttatctaacaaaaacatgtcttctctcatattcctactgttcatat |
114 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14047951 |
accaacattaataaa-tttccacaaaaataactatttcatcacattttccattcttatccaacaaaaacatgtcttctctcatattcctactgttcatat |
14048049 |
T |
|
| Q |
115 |
ttgtatctcactctctttcccttaacgatgaacttgacactctcatgctcatcaaagactctttagacccagaaaaccatgtgttactctcatggaataa |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048050 |
ttgtatctcactctctttcccttaacaatgaacttgacactctcatgctcatcaaagactctttagacccagaaaaccatgtgttactctcatggaataa |
14048149 |
T |
|
| Q |
215 |
tcattctgacccttgtagtggaacttttgatggtgtagcttgtaatgaacaaggttttgttactaatatatcacttcaaggaaaaggtttatctggtgaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048150 |
tcattctgacccttgtagtggaacttttgatggtgtagcttgtaacgaacaaggtcttgttactaatatatcacttcaaggaaaaggtttatctggtgaa |
14048249 |
T |
|
| Q |
315 |
ataccttcagtgattggtaaacttaagagtttaactggtctttaccttcattttaatgctcttaatggtattttgcctaaggaaattgctggtttaactc |
414 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048250 |
ataccctcagtgattggtaaacttaagagtttaactggtctttaccttcattttaatgctcttaatggtattttgcctaaggaaattgctggtttaactc |
14048349 |
T |
|
| Q |
415 |
agcttagtgacttgtatcttaatgttaataatctctctggttttatccctcatgagattggtaacatgtctaatcttcaaggttggtttctga |
507 |
Q |
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| T |
14048350 |
agcttagtgacttgtatcttaatgttaataatctctctggttttatccctcatgagattggtaacatgtctaatcttcaaggttggtttctga |
14048442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Original strand, 14357981 - 14358472
Alignment:
| Q |
15 |
accaacattaataaaatttccacaaaaataactatttcatcacattttccattcttatctaacaaaaacatgtcttctctcatattcctactgttcatat |
114 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14357981 |
accaacattaataaa-tttccacaaaaataactatttcatcacattttccattcttatccaacaaaaacatgtcttctctcatattcctactgttcatat |
14358079 |
T |
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| Q |
115 |
ttgtatctcactctctttcccttaacgatgaacttgacactctcatgctcatcaaagactctttagacccagaaaaccatgtgttactctcatggaataa |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14358080 |
ttgtatctcactctctttcccttaacaatgaacttgacactctcatgctcatcaaagactctttagacccagaaaaccatgtgttactctcatggaataa |
14358179 |
T |
|
| Q |
215 |
tcattctgacccttgtagtggaacttttgatggtgtagcttgtaatgaacaaggttttgttactaatatatcacttcaaggaaaaggtttatctggtgaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14358180 |
tcattctgacccttgtagtggaacttttgatggtgtagcttgtaacgaacaaggtcttgttactaatatatcacttcaaggaaaaggtttatctggtgaa |
14358279 |
T |
|
| Q |
315 |
ataccttcagtgattggtaaacttaagagtttaactggtctttaccttcattttaatgctcttaatggtattttgcctaaggaaattgctggtttaactc |
414 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14358280 |
ataccctcagtgattggtaaacttaagagtttaactggtctttaccttcattttaatgctcttaatggtattttgcctaaggaaattgctggtttaactc |
14358379 |
T |
|
| Q |
415 |
agcttagtgacttgtatcttaatgttaataatctctctggttttatccctcatgagattggtaacatgtctaatcttcaaggttggtttctga |
507 |
Q |
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| T |
14358380 |
agcttagtgacttgtatcttaatgttaataatctctctggttttatccctcatgagattggtaacatgtctaatcttcaaggttggtttctga |
14358472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 609 - 689
Target Start/End: Original strand, 14048545 - 14048625
Alignment:
| Q |
609 |
gtagaattgggtactttttgctacatttggccatgagtatttttggtgattcaacaatcacatgttatcatgtttgttcat |
689 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048545 |
gtagaattgggtactttttgctacatttggccatgagtatttttggtgattcaacaatcacatgttatcatgtttgttcat |
14048625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 609 - 689
Target Start/End: Original strand, 14358575 - 14358655
Alignment:
| Q |
609 |
gtagaattgggtactttttgctacatttggccatgagtatttttggtgattcaacaatcacatgttatcatgtttgttcat |
689 |
Q |
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| T |
14358575 |
gtagaattgggtactttttgctacatttggccatgagtatttttggtgattcaacaatcacatgttatcatgtttgttcat |
14358655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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