View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10938_low_11 (Length: 241)

Name: NF10938_low_11
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10938_low_11
NF10938_low_11
[»] chr7 (1 HSPs)
chr7 (82-229)||(18415672-18415819)
[»] chr3 (1 HSPs)
chr3 (82-224)||(21799601-21799743)
[»] chr5 (1 HSPs)
chr5 (86-229)||(21001032-21001175)
[»] chr4 (1 HSPs)
chr4 (143-222)||(56476138-56476217)
[»] chr1 (1 HSPs)
chr1 (143-222)||(23263724-23263803)
[»] chr6 (1 HSPs)
chr6 (149-222)||(34417228-34417301)


Alignment Details
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 18415819 - 18415672
Alignment:
Q  82 gcctgttatgttgttgaggaatttagacacaaagaatggtttgtgcaatggaaccaggcttattattactagaatgggaagatatgtttttgagggtagg 181  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| || ||||| | |    
T  18415819 gcctgttatgttgttgaggaatttagacacaaagaatggtttatgcaatggaaccagacttattataactagaatgggaagatatgtcttagagggcaag 18415720  T
Q  182 gtgatttctggaagtaatatgggtgacaaagtctttatacctatgcta 229  Q
    || ||||||||||||||| ||||||||| |||||||||||||| ||||    
T  18415719 gtaatttctggaagtaatgtgggtgacagagtctttatacctaggcta 18415672  T

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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 21799601 - 21799743
Alignment:
Q  82 gcctgttatgttgttgaggaatttagacacaaagaatggtttgtgcaatggaaccaggcttattattactagaatgggaagatatgtttttgagggtagg 181  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| || ||||| | |    
T  21799601 gcctgttatgttgttgaggaatttagacacaaagaatggtttatgcaatggaaccagacttattataactagaatgggaagatatgtcttagagggcaag 21799700  T
Q  182 gtgatttctggaagtaatatgggtgacaaagtctttataccta 224  Q
    || ||||| | ||||||| ||||||||| ||||||||||||||    
T  21799701 gtaatttccgaaagtaatgtgggtgacagagtctttataccta 21799743  T

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Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 21001175 - 21001032
Alignment:
Q  86 gttatgttgttgaggaatttagacacaaagaatggtttgtgcaatggaaccaggcttattattactagaatgggaagatatgtttttgagggtagggtga 185  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||| || ||||  | ||| |    
T  21001175 gttatgttgttgaggaatttagacacaaagaatggtttatgcaatgaaaccagacttattataactagaatgggaagatatgtcttagaggtcaaggtaa 21001076  T
Q  186 tttctggaagtaatatgggtgacaaagtctttatacctatgcta 229  Q
    |||| ||||||||| ||||||||| |||||||||||||| ||||    
T  21001075 tttccggaagtaatgtgggtgacagagtctttatacctaggcta 21001032  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 56476217 - 56476138
Alignment:
Q  143 attattactagaatgggaagatatgtttttgagggtagggtgatttctggaagtaatatgggtgacaaagtctttatacc 222  Q
    ||||||||||||||||||||||| || || ||||| | ||| ||||||||||||||||| ||||||||||| ||||||||    
T  56476217 attattactagaatgggaagatacgtattcgaggggaaggtaatttctggaagtaatatcggtgacaaagtgtttatacc 56476138  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 23263724 - 23263803
Alignment:
Q  143 attattactagaatgggaagatatgtttttgagggtagggtgatttctggaagtaatatgggtgacaaagtctttatacc 222  Q
    ||||||||||||||||||||||| ||  | ||||| | ||| ||||||||||||||||| ||||||||||| ||||||||    
T  23263724 attattactagaatgggaagatacgtaatcgaggggaaggtaatttctggaagtaatatcggtgacaaagtgtttatacc 23263803  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 34417301 - 34417228
Alignment:
Q  149 actagaatgggaagatatgtttttgagggtagggtgatttctggaagtaatatgggtgacaaagtctttatacc 222  Q
    ||||||||||||| || |||| |||| || ||||| ||||||||||||||||| || || ||||| || |||||    
T  34417301 actagaatgggaaaatttgttcttgaaggaagggttatttctggaagtaatattggcgaaaaagtgttcatacc 34417228  T

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