View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10938_low_3 (Length: 457)
Name: NF10938_low_3
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10938_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 4 - 439
Target Start/End: Original strand, 5603930 - 5604365
Alignment:
| Q |
4 |
taagttttgcatcacacatcagttagcttttatcatgggatcaataaactcattattaaattaaatagatatttattgattcaatcgtnnnnnnncacgc |
103 |
Q |
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| T |
5603930 |
taagttttgcatcacacatcagttagcttttatcatgggatcaataaactcattattaaattaaatagatatttattgattcaatcgtaaaaaaacacgc |
5604029 |
T |
|
| Q |
104 |
taaactattttacttgttcacaaatcctattgttatatatctaatatttcttggcacctttaagtagaaggaagaattaataactgtacaagggtgggga |
203 |
Q |
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| T |
5604030 |
taaactattttacttgttcacaaaacctattgttatatatctaatatttcttggcacctttaagtagaaggaagaattaataactgtacaagggtgggga |
5604129 |
T |
|
| Q |
204 |
cataatatctaaatttcaagtttctttttcaacctaactcttcattcattggattcctgtcatccgaacgttgcctcagatgcaaacgaagcaaccacaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604130 |
cataatatctaaatttcaagtttctttttcaacctaactcttcattcattggattcctgtcatccgaacgttgcctcagatgcaaacgaagcaaccacaa |
5604229 |
T |
|
| Q |
304 |
cgtggcccttttttcaaactgcttatttcagcttaattcttgtgacgatattacatcattgttaagcacttgaagttaagtttaagtggatattaactag |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604230 |
cgtggcccttttttcaaactgcttatttcagcttaattcttgtgacgatattacatcattgttaagcacttgaagttaagtttaagtggatattaactag |
5604329 |
T |
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| Q |
404 |
taacatcaataaagttcaatactgtttatgctaggt |
439 |
Q |
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| T |
5604330 |
taacatcaataaagttcaatactgtttatgctaggt |
5604365 |
T |
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