View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10938_low_7 (Length: 321)
Name: NF10938_low_7
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10938_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 3447011 - 3447311
Alignment:
| Q |
7 |
agagaagaaggataccctgtgctgtggcgcggtttaggaactgcggttgccagagcatttgttgtgaatggtgctgtatttgctgcttatgagtttgcac |
106 |
Q |
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| T |
3447011 |
agagaagaaggataccctgtgctgtggcgtggtttaggaactgcggttgccagagcatttgttgtgaatggtgctgtatttgctgcttatgagtttgcac |
3447110 |
T |
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| Q |
107 |
tgcggtttctgtttagcaatgaaaaagttcaaatgcaggaaacaatttagaatggcaggttcactaaaaacaatcaaaattcagctgttatattcattat |
206 |
Q |
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| T |
3447111 |
tgcgttttctgtttaacaatgaaaacgttcaaatgcaggaaacaatttagaatggcaggttcactaaaaacaatcaaaattcagctgttatattcattat |
3447210 |
T |
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| Q |
207 |
aaaacattttatattcatacaaatacaattgccaaacatttgtcctccatcttctattagtttactgtgaaacttatgtatgtattggaaagggtcaata |
306 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3447211 |
aaaacattttatattcatacaaatacaattgtcaaacatttgtcctccatcttctattagtttactgtgaaacttatgtatttattggaaagggtcaata |
3447310 |
T |
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| Q |
307 |
g |
307 |
Q |
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| T |
3447311 |
g |
3447311 |
T |
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