View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10938_low_9 (Length: 308)
Name: NF10938_low_9
Description: NF10938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10938_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 42444132 - 42444415
Alignment:
| Q |
18 |
aggaacaacaagacaacaacaaccttttaaaaacaaatactaatcattgttgccgacttaagaataaatatacactacatgaatcatgacatatataata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42444132 |
aggaacaacaagacaacaacaaccttttaaaaacaaatactagtcattgttgccgacttaagaataaatatacaccacatgaatcatgacatatataata |
42444231 |
T |
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| Q |
118 |
taaccatgccagccagcaaaaagtgttacttacaaagttacatataaatatataatcattgtgaatg----tatttagagcacacctctttcattcttcc |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
42444232 |
taaccatgctagccagcaaaaagtgttacttacaaagttacatataaatatataatcattgtgaatgtatttatttagagcacacttctttcattcttcc |
42444331 |
T |
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| Q |
214 |
atcaagcagaaagtaaagtttctcttgaacatggattatttccttttcattgctctcactttcgtgttgagtttccatattcat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444332 |
atcaagcagaaagtaaagtttctcttgaacatggattatttccttttcattgctctcactttcgtgttgagtttccatattcat |
42444415 |
T |
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