View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10939_high_5 (Length: 388)

Name: NF10939_high_5
Description: NF10939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10939_high_5
NF10939_high_5
[»] chr8 (31 HSPs)
chr8 (17-381)||(4682073-4682437)
chr8 (17-203)||(4689654-4689836)
chr8 (17-210)||(4997074-4997265)
chr8 (17-211)||(4737424-4737614)
chr8 (17-203)||(4775823-4776004)
chr8 (247-377)||(4690082-4690212)
chr8 (17-211)||(4704160-4704366)
chr8 (20-211)||(4716199-4716386)
chr8 (41-211)||(4726891-4727057)
chr8 (91-204)||(4889266-4889379)
chr8 (247-376)||(4775244-4775373)
chr8 (247-377)||(4727302-4727432)
chr8 (17-211)||(4900341-4900539)
chr8 (275-381)||(10448507-10448613)
chr8 (247-377)||(4704616-4704746)
chr8 (91-211)||(10448077-10448197)
chr8 (250-377)||(4922229-4922355)
chr8 (247-377)||(4737881-4738011)
chr8 (291-377)||(4888957-4889043)
chr8 (246-377)||(4874228-4874359)
chr8 (247-377)||(4716723-4716852)
chr8 (91-211)||(4923159-4923279)
chr8 (17-201)||(21438697-21438888)
chr8 (275-382)||(4912464-4912571)
chr8 (247-377)||(4899960-4900089)
chr8 (17-211)||(4912747-4912943)
chr8 (247-382)||(21438258-21438393)
chr8 (47-125)||(4746232-4746310)
chr8 (17-191)||(4874545-4874723)
chr8 (247-377)||(4921949-4922078)
chr8 (291-364)||(4997327-4997400)


Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 4682073 - 4682437
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatatttggaaatacaaccaggaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4682073 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatatttggaaatacaaccaggaatt 4682172  T
Q  117 tgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaatgataa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4682173 tgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcactatgttacagtacttgtgagttcctaatctcatttggttaaatgataa 4682272  T
Q  217 aaccaaatctaaattattttctttcagggatttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagc 316  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4682273 aaccaaatctaaattattttctttcagggatttattagagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagc 4682372  T
Q  317 ttaaacggttctttacctgattttctgatgcaactgcgttcactaaaagtcttgtaagtcctatg 381  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4682373 ttaaatggttctttacctgattttctgatgcaactgcgttcactaaaagtcttgtaagtcctatg 4682437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 4689654 - 4689836
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatatttggaaatacaaccaggaatt 116  Q
    |||||||||||||||||| ||| |||||| ||||   ||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||    
T  4689654 ctttgtaagtttacaatcacttcaataaaccata---ataaattcaaaaacttcaa-taacctctaatgttatatatatttggaaatgcaaccaggaatt 4689749  T
Q  117 tgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcattt 203  Q
    |||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4689750 tgtcttcaagtggattgacaggggagatagcatctttcatatcaaagctcgctatgttagagtacttgtgagttcctaatctcattt 4689836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 4997074 - 4997265
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatatttggaaatacaaccaggaatt 116  Q
    ||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||| || |||||||| |  |  |||||||||||||||  |||||||||||    
T  4997074 ctttgtaggtttataattccttaaataaaccatatgcataaattcaaaaacttgaattatcctctgaaat--tatatatttggaaatgaaaccaggaatt 4997171  T
Q  117 tgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaa 210  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4997172 tgtcttcaagtggattgacaggggagatatcatcttctatatcaaagctctctatgttacagtacttgtgagttcctaatctcatttggttaaa 4997265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 4737424 - 4737614
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatatttggaaatacaaccaggaatt 116  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||| | ||| |||    |||||||   |||||||||||    
T  4737424 ctttgtaagtttataattccttaaataaaccatatgcataaattcaaaaacttcaattatcctctgaagttttat----ttggaaactgaaccaggaatt 4737519  T
Q  117 tgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 211  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||| ||||||    
T  4737520 tgtcttcaagtggattgacaggggagatatcatcttccatatcaaagctcactatgttgcaatacttgtgagttcctaatcccatttgattaaat 4737614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 4776004 - 4775823
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaatt-caaaaacttcaagtatcctctaatgttatatatatttggaaatacaaccaggaat 115  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||||||| || |||||||| |  ||||      ||||||| ||||||||||||    
T  4776004 ctttgtaagtttacaatcccttaaattaaccatatgcataaatttcaaaaactttaattatcctctgaaattat------ttggaaacacaaccaggaat 4775911  T
Q  116 ttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcattt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| ||||    
T  4775910 ttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctaactatgttacaatacttgtgagttcctaatcttattt 4775823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 4690082 - 4690212
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 346  Q
    ||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     
T  4690082 tttattggagattcaaaattgtaactctgaatttacattgttttctttcagggatttatcaaacaatagcttaaacggtcctatacctgattttctgatt 4690181  T
Q  347 caactgcgttcactaaaagtcttgtaagtcc 377  Q
    |||||||| ||||||||||||||||||||||    
T  4690182 caactgcggtcactaaaagtcttgtaagtcc 4690212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 4704160 - 4704366
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatat------------ttggaaata 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| | | |||||| ||||||            || |||||     
T  4704160 ctttgtaagtttacaatcccttaaataaatcatatccataaattcaagaacttcaattatcatttgatgttaaatatatccctgaaattattttgaaatg 4704259  T
Q  105 caaccaggaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttg 204  Q
     |||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| || | || ||||||||||||||||||||||||||||||||    
T  4704260 aaaccaggaatttgtcttcaagtgggttgacaggggagatatcatcttccatattaaagttcaccatattacagtacttgtgagttcctaatctcatttg 4704359  T
Q  205 gttaaat 211  Q
     ||||||    
T  4704360 attaaat 4704366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 4716199 - 4716386
Alignment:
Q  20 tgtaagtttacaatcccttaa---ataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatatttggaaatacaaccaggaatt 116  Q
    |||||||||||||||||||||   ||||| ||||||||||| |||||||||||    ||||||||||  |||||    ||||||||| ||||||||||||    
T  4716199 tgtaagtttacaatcccttaataaataaaccatatgcataacttcaaaaacttt---tatcctctaaaattata----tttggaaatgcaaccaggaatt 4716291  T
Q  117 tgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 211  Q
    || ||||||||||||||||||| |||||| |||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||    
T  4716292 tggcttcaagtggattgacaggggagataccatcttccatctcaaagctcactatgttagagtacttgtgagtttctaatctcatttgattaaat 4716386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 41 - 211
Target Start/End: Original strand, 4726891 - 4727057
Alignment:
Q  41 ataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatatttggaaatacaaccaggaatttgtcttcaagtggattgacaggag 140  Q
    ||||| ||||||||||||||| ||||||| || |||||||| | ||    | ||||||||||| |||||||||||||||||||||||||||||||||| |    
T  4726891 ataaaccatatgcataaattccaaaactttaattatcctctgaagt----tttatttggaaatgcaaccaggaatttgtcttcaagtggattgacagggg 4726986  T
Q  141 agatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 211  Q
    ||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||| |||||| ||||||    
T  4726987 agatatcatctgccatatcaaagctcactatgttgcaatacttgtgagttcctaatcccatttgattaaat 4727057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 4889379 - 4889266
Alignment:
Q  91 tatatttggaaatacaaccaggaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagtt 190  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  4889379 tatatttggaaatgcaaccaggaatttgtcttcaagtggattgacaggggagatatcatcatccatatcaaagctcactatgttacaatacttgtgagtt 4889280  T
Q  191 cctaatctcatttg 204  Q
    ||||||||||||||    
T  4889279 cctaatctcatttg 4889266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 247 - 376
Target Start/End: Complemental strand, 4775373 - 4775244
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 346  Q
    |||||||| |||||||| |||||||||  ||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||     
T  4775373 tttattggggattcaaatttgtaactctacatttaaattgttttctttcagggatttgtcaaacaatagcttaaacggtcctttacctgattttctgata 4775274  T
Q  347 caactgcgttcactaaaagtcttgtaagtc 376  Q
    ||||| || |||||| ||||||||||||||    
T  4775273 caacttcggtcactacaagtcttgtaagtc 4775244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 4727302 - 4727432
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 346  Q
    ||||||||  ||||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  4727302 tttattggcaattcaaaattgtaacactgtatttaaattgttttctttcagggatttatcaaacaatagcttgaacggtcctttacctgattttctgatg 4727401  T
Q  347 caactgcgttcactaaaagtcttgtaagtcc 377  Q
    || ||| | ||||||||| ||||||||||||    
T  4727402 cagctgaggtcactaaaaatcttgtaagtcc 4727432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 4900539 - 4900341
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctct-aatgttatatatatttggaaat----acaaccag 111  Q
    ||||||||||||||||| |||||||||||   ||||||||| |||||||||||||| | | |||| | ||  | | || |||| ||||     |||||||    
T  4900539 ctttgtaagtttacaattccttaaataaactgtatgcataacttcaaaaacttcaattgtgctctgactgaaaga-atgtttgaaaatggaaccaaccag 4900441  T
Q  112 gaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 211  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||  |||||||    
T  4900440 ggatttgtcttcaagtggattgacaggggagatatcatcttccatatcgaagctcactatgttacagtacttgtaagttcctaatctcattctgttaaat 4900341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 10448507 - 10448613
Alignment:
Q  275 gcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaactgcgttcactaaaagtcttgtaag 374  Q
    |||| ||||||| || ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  10448507 gcatataaattgtttcctttcagggatttatcaaacaatagtttaaagggttccttacctgattttctgatgcaactgcggtcactaaaagtcttgtaag 10448606  T
Q  375 tcctatg 381  Q
    |||||||    
T  10448607 tcctatg 10448613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 4704616 - 4704746
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 346  Q
    |||||||| |||||||||||||||||| | ||||   || ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||      
T  4704616 tttattggggattcaaaattgtaactccgtatttttttttctttctttcagggatttatcaaacaatagcttaaacggccctttacctgattttctgaca 4704715  T
Q  347 caactgcgttcactaaaagtcttgtaagtcc 377  Q
    |||||||| || |||||||||||||| ||||    
T  4704716 caactgcggtctctaaaagtcttgtatgtcc 4704746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 10448077 - 10448197
Alignment:
Q  91 tatatttggaaatacaaccaggaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagtt 190  Q
    |||||||| |||| ||| ||||||||||||||||||||||||||| ||  ||||| || ||||||||||||||||| ||||||||||||| |||||||||    
T  10448077 tatatttgaaaatgcaatcaggaatttgtcttcaagtggattgactggtcagatagcaccttccatatcaaagctcactatgttacagtatttgtgagtt 10448176  T
Q  191 cctaatctcatttggttaaat 211  Q
    |||||||||||| | ||||||    
T  10448177 cctaatctcattggattaaat 10448197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 377
Target Start/End: Complemental strand, 4922355 - 4922229
Alignment:
Q  250 attggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaa 349  Q
    |||| ||||||||||||||||||| |||| ||||||| ||  |||||||||||||||||||||||||||| | || || ||||||||||||||||| |||    
T  4922355 attgaagattcaaaattgtaactctgcatataaattg-ttcatttcagggatttatcaaacaatagcttacagggatccttacctgattttctgatacaa 4922257  T
Q  350 ctgcgttcactaaaagtcttgtaagtcc 377  Q
    ||||  ||||||||||||||||||||||    
T  4922256 ctgcagtcactaaaagtcttgtaagtcc 4922229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 4737881 - 4738011
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 346  Q
    |||||||| | |||||||||||||||| |  ||||||||| || |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  4737881 tttattgggggttcaaaattgtaactctgtgtttaaattgtttactttcagggatttatcaaacaatagcttgaatggtcctttacctgattttctgatg 4737980  T
Q  347 caactgcgttcactaaaagtcttgtaagtcc 377  Q
    || ||| | ||||||||| | ||||||||||    
T  4737981 cagctgaggtcactaaaaatattgtaagtcc 4738011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 377
Target Start/End: Complemental strand, 4889043 - 4888957
Alignment:
Q  291 ctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaactgcgttcactaaaagtcttgtaagtcc 377  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4889043 ctttcagggatttatcaaacaatagcttaagcggtcccttacctgattttctgatgcaactgcgatcattaaaagtcttgtaagtcc 4888957  T

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Target: chr8; HSP #20
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 4874359 - 4874228
Alignment:
Q  246 atttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgat 345  Q
    ||||| || ||||||||||||||||||  ||||||  |||| || ||||||||||||||||||||||||| ||||||||| | |||||||| | | ||||    
T  4874359 atttaatgtagattcaaaattgtaactatgcatttccattgtttcctttcagggatttatcaaacaatagtttaaacggtcccttacctgactctttgat 4874260  T
Q  346 gcaactgcgttcactaaaagtcttgtaagtcc 377  Q
    ||||||||  ||| ||||||||||||||||||    
T  4874259 gcaactgcaatcattaaaagtcttgtaagtcc 4874228  T

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Target: chr8; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 4716723 - 4716852
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 346  Q
    |||||||| | |||| |||||||||||   | |||||||  |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  4716723 tttattgggggttcacaattgtaactctttaattaaattt-tttctttcagggatttatcaaacaatagcttaaacggcccattacctgattttctgatg 4716821  T
Q  347 caactgcgttcactaaaagtcttgtaagtcc 377  Q
    |||||||| || || ||||||||||| ||||    
T  4716822 caactgcggtctctgaaagtcttgtatgtcc 4716852  T

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Target: chr8; HSP #22
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 4923279 - 4923159
Alignment:
Q  91 tatatttggaaatacaaccaggaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagtt 190  Q
    |||||||||||||  ||||||||||||||||||||||||| | |||||  || || ||| | | |||||||||||| ||||||| ||||||||||||||     
T  4923279 tatatttggaaatggaaccaggaatttgtcttcaagtggactcacagggcagttaacatatcctatatcaaagctcactatgttgcagtacttgtgagta 4923180  T
Q  191 cctaatctcatttggttaaat 211  Q
    |||||| ||||||||||||||    
T  4923179 cctaatttcatttggttaaat 4923159  T

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Target: chr8; HSP #23
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 21438888 - 21438697
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcata---aattcaaaaacttcaagtatcctctaatgttatatatatttggaaata----caacc 109  Q
    |||||||||||||| || ||||||||||| |||||||| |   |||||||||||||||| |||||||| |  | |  ||||| |||||||     |||||    
T  21438888 ctttgtaagtttactattccttaaataaaccatatgcaaatataattcaaaaacttcaattatcctctgacttaaagtatatatggaaatggaaccaacc 21438789  T
Q  110 aggaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcat 201  Q
    ||||||||||||||||||||| ||| |||  | |||||||||| ||| ||||||||| | ||||||||  |||||||||||||| |||||||    
T  21438788 aggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 21438697  T

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Target: chr8; HSP #24
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 382
Target Start/End: Complemental strand, 4912571 - 4912464
Alignment:
Q  275 gcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaactgcgttcactaaaagtcttgtaag 374  Q
    |||||||||||  || ||||||| |||||||||||||||||| |||| ||| | |||||||||||||||| |||| |||| |||||||||||||||||||    
T  4912571 gcatttaaattctttcctttcagagatttatcaaacaatagcctaaatggtcccttacctgattttctgacgcaaatgcgatcactaaaagtcttgtaag 4912472  T
Q  375 tcctatgc 382  Q
    ||| ||||    
T  4912471 tcccatgc 4912464  T

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Target: chr8; HSP #25
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 247 - 377
Target Start/End: Complemental strand, 4900089 - 4899960
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 346  Q
    ||||||||||||| |||||| |||| | |||||||||||   | |||||||  ||||||| |||||||||||||||||| | | ||||||||||||||||    
T  4900089 tttattggagatttaaaattttaacactgcatttaaattctatcctttcagaaatttatctaacaatagcttaaacggtccat-acctgattttctgatg 4899991  T
Q  347 caactgcgttcactaaaagtcttgtaagtcc 377  Q
    ||||| || || |||||||||||||||||||    
T  4899990 caactacgatcgctaaaagtcttgtaagtcc 4899960  T

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Target: chr8; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 4912943 - 4912747
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttata-tatatttggaaatacaacca---gg 112  Q
    |||||||||||||| || ||||||||||| ||||  ||||||||||| |||||||| |||||||| |  | | | ||||| |||||||  |||||   ||    
T  4912943 ctttgtaagtttaccattccttaaataaaccata--cataaattcaagaacttcaattatcctctgacttaaaagtatatatggaaatggaaccaacagg 4912846  T
Q  113 aatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 211  Q
     ||||||||||||||||||| | |||  | ||||||| |||||||||||||||| | || ||||| ||||||||||||||| ||||||||  |||||||    
T  4912845 gatttgtcttcaagtggattaaaagggcatatatcatattccatatcaaagctcacaatattacaatacttgtgagttcctcatctcattatgttaaat 4912747  T

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Target: chr8; HSP #27
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 382
Target Start/End: Complemental strand, 21438393 - 21438258
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttc-tttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgat 345  Q
    |||||| ||||||||||||| |||||  ||||||||||| || || |||||| ||||||||||||||||| || |||||| | ||||||||||||||| |    
T  21438393 tttattagagattcaaaattttaactatgcatttaaatt-ctgtcatttcagagatttatcaaacaatagtttgaacggtcccttacctgattttctggt 21438295  T
Q  346 gcaactgcgttcactaaaagtcttgtaagtcctatgc 382  Q
    ||||||||  |||||  ||||||||||||||| ||||    
T  21438294 gcaactgcaatcactgcaagtcttgtaagtcccatgc 21438258  T

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Target: chr8; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 4746232 - 4746310
Alignment:
Q  47 catatgcataaattcaaaaa-cttcaagtatcctctaatgttatatatatttggaaatacaaccaggaatttgtcttcaa 125  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  4746232 catatgcataaattcaaaaaacttcaa-taacctctaatgttatatatatttggaaatgcaaccaggaatttgtcgtcaa 4746310  T

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Target: chr8; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 4874723 - 4874545
Alignment:
Q  17 ctttgtaagtttacaatcccttaaataaatcatatgcataaattcaaaaacttcaagtatcctctaatgttatatatatttggaaatacaacc-----ag 111  Q
    ||||||||||||||||||||| ||||||| ||| | ||||||||||| ||| |||| ||||||||||    |  |||||||| ||||  ||||     ||    
T  4874723 ctttgtaagtttacaatccctgaaataaaccattt-cataaattcaacaacctcaattatcctctaacagaaactatatttgaaaatggaacccaactag 4874625  T
Q  112 gaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcgctatgttacagtacttgtgagttc 191  Q
    |||||||||||||  ||||||||||||  |||||||||||| ||| ||||| ||| |||||||| ||||||||| |||||    
T  4874624 gaatttgtcttcatctggattgacagggcagatatcatctttcatctcaaatctcactatgttagagtacttgtaagttc 4874545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 377
Target Start/End: Complemental strand, 4922078 - 4921949
Alignment:
Q  247 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 346  Q
    |||||||| | ||||||||||||| || |||| ||||||| ||  ||||||||| |||||||||||| | ||||||||| ||||||||||||| ||||      
T  4922078 tttattggggtttcaaaattgtaattctgcatataaattg-ttcatttcagggacttatcaaacaatggtttaaacggtcctttacctgatttcctgaca 4921980  T
Q  347 caactgcgttcactaaaagtcttgtaagtcc 377  Q
    |||||||  |||||||| || ||||||||||    
T  4921979 caactgccatcactaaatgtattgtaagtcc 4921949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 4997327 - 4997400
Alignment:
Q  291 ctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaactgcgttcactaaaa 364  Q
    ||||||||||||||||||| |||||||||| |||  | ||||||||||||||||  |||||||| |||||||||    
T  4997327 ctttcagggatttatcaaataatagcttaagcggccccttacctgattttctgacacaactgcggtcactaaaa 4997400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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