View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10939_low_1 (Length: 1055)
Name: NF10939_low_1
Description: NF10939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10939_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 897; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 897; E-Value: 0
Query Start/End: Original strand, 102 - 1049
Target Start/End: Original strand, 41951762 - 41952712
Alignment:
| Q |
102 |
taacttttaattaatataatgttataaggctccaattatctttggctttttgctgcattctaaggcgaacaattccatttctttcctctttccattgcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41951762 |
taacttttaattaatataatgttataaggctccaattatctttggctttttgctgcattctaaggcgaacaattccatttctttcctctttccattgcaa |
41951861 |
T |
|
| Q |
202 |
ctaccaccaactccatctgaaccaggtagtttcaaaagattcaccccaaaaagccgaaccatctgaaccggttcaactaccggtcgaaccgtaataaaca |
301 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41951862 |
ctaccaccaactccttctgaaccaggtagtttcaaaagattcaccccaaaaagccgaaccatctgaaccggttcaactaccggtcgaaccgtaataaaca |
41951961 |
T |
|
| Q |
302 |
aaccaccagtatt---attattattatcaacctcaccaccgacaacaccaatgctccttgctttacagtcaatgtaaagctgccggtccggtccagtcga |
398 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41951962 |
aaccaccagtattattattattattatcaacctgaccaccgacaacaccaatgctccttgctttacagtcaatgtaaagctgccggtccggtccagtcga |
41952061 |
T |
|
| Q |
399 |
cctaaaaaaccgaaccgcatcaccggctcggagattcttctccttaacgaaccggctccatcctttggtcaaaacataactctggctactattccaataa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41952062 |
cctaaaaaaccgaaccgcatcaccggctcggagattcttctccttaacgaaccggctccatcctttggtcaaaacataactctggctactattccaataa |
41952161 |
T |
|
| Q |
499 |
gaataacgaaatcgccacactttccctccaacgtcttcgaaattcaaaagcaaccccttcgccgccgcagcagccgtcgagactccgtctcctgcaacgg |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
41952162 |
gaataacgaaatcgccacactttccctccaacgtcttcgaaattcaaaagcaaacccttcgccgccgcagcagccgtcgagactccgtcgcatgcgacgg |
41952261 |
T |
|
| Q |
599 |
caacagcaactgcattcaacggaaaatgcttctccgcatgctgtttcggtatcaccaaccgattcaacttccctacgtcactcggcgtaaccgttttctc |
698 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41952262 |
caacagcaactgcattcaacggaaaatgcttctccgcatgctgtttcggtatcaccaaccgattcaacttccccacgtcactcggcgtaaccgttttctc |
41952361 |
T |
|
| Q |
699 |
aaacaactgctcacgcgctttagcctcacacgcgccacgtgaaaccgcaccattcaattctccgttacgccgctgtcttccaccgctcatgtcacgcatg |
798 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41952362 |
aaacaactgctcacgcgctttagcatcacacgcgccacgtgaaaccgcaccattcaattctccgttacgccgctgtcttccaccgctcatgtcacgcatg |
41952461 |
T |
|
| Q |
799 |
ctttgcttaagctcgtcatcgtaggtgtgtttccgaagcatatcaacaatctccgacttagaatgtgaattcagaaactcagtttcaccttcgtcggcgt |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41952462 |
ctttgcttaagctcgtcatcgtaggtgtgtttccgaagcatatcaacaatctccgacttagaatgtgaattcagaaactcagtttcaccttcgtcggcgt |
41952561 |
T |
|
| Q |
899 |
cgttaccaacgccggtgagacttttagaatttgtaacggcatcttttccacggaatctcaaggcggctatgtcataggctctggctgcttcgtcttcttc |
998 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41952562 |
cgttaccaacgccagtgagacttttagaatttgtaacagcatcttttccacggaatctcaaggcggctatgtcataggctctggctgcttcgtcttcttc |
41952661 |
T |
|
| Q |
999 |
attgaacgtaccaagccacacacgctggtgtttctcgtaaatctgtgctcc |
1049 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41952662 |
attgaacgtaccaagccacacacgctggtgtttctcgtaaatctgtgctcc |
41952712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41951661 - 41951725
Alignment:
| Q |
1 |
tgcaactacaccactattgcttcttctaattcttttcctcatgatttgatcaatcacataatttg |
65 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41951661 |
tgcaactacaccactattacttcttctaattcttttcctcatgatttgatcaatcacataatttg |
41951725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 3e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 411 - 550
Target Start/End: Complemental strand, 22190449 - 22190310
Alignment:
| Q |
411 |
aaccgcatcaccggctcggagattcttctccttaacgaaccggctccatcctttggtcaaaacataactctggctactattccaataagaataacgaaat |
510 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||| || | ||| ||||| || ||||| ||||||||||| || | |||| |
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| T |
22190449 |
aaccgtatcaccggctttcagattcttctccttaacgaaccggctccatccttttgttagaacgtaactttgactactgttccaataagagtatctaaat |
22190350 |
T |
|
| Q |
511 |
cgccacactttccctccaacgtcttcgaaattcaaaagca |
550 |
Q |
| |
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| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
22190349 |
ctccacactttccctccaatgtcttcaaaattcaaaagca |
22190310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 619 - 689
Target Start/End: Complemental strand, 22190256 - 22190186
Alignment:
| Q |
619 |
ggaaaatgcttctccgcatgctgtttcggtatcaccaaccgattcaacttccctacgtcactcggcgtaac |
689 |
Q |
| |
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||||| |||||||| ||||||||||||||||| || |||||||| |||||||| ||||| ||||| ||||| |
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| T |
22190256 |
ggaaagtgcttctcagcatgctgtttcggtataactaaccgatttaacttcccaacgtcgctcggggtaac |
22190186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 985 - 1049
Target Start/End: Complemental strand, 22189887 - 22189823
Alignment:
| Q |
985 |
gcttcgtcttcttcattgaacgtaccaagccacacacgctggtgtttctcgtaaatctgtgctcc |
1049 |
Q |
| |
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||||||||||||| || || || |||||||||||||||||||| || ||||||||||||||||| |
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| T |
22189887 |
gcttcgtcttcttggttaaatgttccaagccacacacgctggtgcttttcgtaaatctgtgctcc |
22189823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 22190600 - 22190528
Alignment:
| Q |
230 |
gtttcaaaagattcaccccaaaaagccgaaccatctgaaccggttcaactaccggtcgaaccgtaataaacaa |
302 |
Q |
| |
|
||||||||| ||| |||||||| | |||||||||||||||||| ||||| ||||||| ||||| || |||||| |
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|
| T |
22190600 |
gtttcaaaatattaaccccaaataaccgaaccatctgaaccggctcaacaaccggtccaaccggaacaaacaa |
22190528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 48596138 - 48596068
Alignment:
| Q |
433 |
ttcttctccttaacgaaccggctccatcctttggtcaaaacataactctggctactattccaataagaata |
503 |
Q |
| |
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||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
48596138 |
ttcttctccttaacgaaacggctccaaccttttgtcatcacataactctggctactgttccaataagaata |
48596068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 436 - 517
Target Start/End: Original strand, 8775033 - 8775114
Alignment:
| Q |
436 |
ttctccttaacgaaccggctccatcctttggtcaaaacataactctggctactattccaataagaataacgaaatcgccaca |
517 |
Q |
| |
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||||| ||||| || |||||||| ||||| |||| |||||| || |||||||| ||||||||||| || | ||||| ||||| |
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| T |
8775033 |
ttctctttaacaaaacggctccaaccttttgtcataacatagctttggctactgttccaataagagtatctaaatctccaca |
8775114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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