View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10939_low_2 (Length: 852)
Name: NF10939_low_2
Description: NF10939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10939_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 23408839 - 23408328
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23408839 |
gaagagaagtaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggt |
23408740 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408739 |
atcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
23408640 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatt |
300 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23408639 |
ttcagaccgcggtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatt |
23408540 |
T |
|
| Q |
301 |
tcgtttatgtttattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgat |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408539 |
tcgattatgtttattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgat |
23408440 |
T |
|
| Q |
401 |
atttgacttgaaaattgcttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagactgaatacattttctcataaaatatagt |
500 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23408439 |
atttgacatgaaaattgcttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagacggaatacattttctcataaaatatagt |
23408340 |
T |
|
| Q |
501 |
tggattcctcct |
512 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23408339 |
tggattcctcct |
23408328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 23416008 - 23415712
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23416008 |
gaagagaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggt |
23415909 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415908 |
atcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
23415809 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23415808 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac |
23415712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 23453671 - 23453376
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23453671 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggt |
23453572 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453571 |
atcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
23453472 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
23453471 |
ttcagactgcagtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga |
23453376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 23868711 - 23869006
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868711 |
gaagagaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatggga |
23868810 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868811 |
ataatgaacagtttcatcaatgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
23868910 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || ||||||| |
|
|
| T |
23868911 |
ttcagactgctgtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga |
23869006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 24307202 - 24307497
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307202 |
gaagagaagcaagaagaatgttgaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
24307301 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307302 |
ataatgaacagtttcatcaatgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
24307401 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || ||||||| |
|
|
| T |
24307402 |
ttcagactgctgtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga |
24307497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 23885806 - 23886101
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23885806 |
gaagagaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggt |
23885905 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23885906 |
atcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
23886005 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
23886006 |
ttcagactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga |
23886101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 23402053 - 23402348
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23402053 |
gaagagaagtaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggt |
23402152 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23402153 |
atcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
23402252 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
23402253 |
ttcagactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga |
23402348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 26832714 - 26833009
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832714 |
gaagagaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggt |
26832813 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832814 |
atcatgaacagtttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
26832913 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26832914 |
ttcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
26833009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 26434003 - 26434298
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26434003 |
gaagagaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggt |
26434102 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434103 |
atcatgaacagtttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
26434202 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26434203 |
ttcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
26434298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 26435783 - 26436078
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26435783 |
gaagagaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggt |
26435882 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26435883 |
atcatgaacagtttcatcaatgatatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
26435982 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
||||||| || ||||| |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26435983 |
ttcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga |
26436078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 34662340 - 34662045
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34662340 |
gaagagaaacaagaagagcgttgaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggt |
34662241 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||| || || ||||| ||||||| |
|
|
| T |
34662240 |
attatgaacagtttcatcaatgatatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaa |
34662141 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
34662140 |
ttcagactgctgttaggcttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga |
34662045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 691 - 835
Target Start/End: Complemental strand, 23408093 - 23407949
Alignment:
| Q |
691 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctgtaagcacaaacacatctgatacaaaatatatacatgaaagttc |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408093 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctttaagcacaaacacatctgatacaaaatatatacatgaaagttc |
23407994 |
T |
|
| Q |
791 |
agaggtgagcttagaaggaaagatacatggtgtgtgtttgattct |
835 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23407993 |
agaggtgagcttagaaagaaagatacatggtgtgtgtttgattct |
23407949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 547 - 681
Target Start/End: Complemental strand, 23408326 - 23408192
Alignment:
| Q |
547 |
tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttggcttagatgcaaaattaaggatgttttttgctgtaattctgca |
646 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23408326 |
tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttggctgagatgcaaaattaaggatgttttttgctgtaattgtgca |
23408227 |
T |
|
| Q |
647 |
gaagatatctgctatatgtttaattataagtggac |
681 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408226 |
gaagatatctgctatatgtttaattataagtggac |
23408192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
112 |
tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca |
211 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
212 |
gtcagacttgttcttcctggtgaattggccaag |
244 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 5e-52; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 41670379 - 41670651
Alignment:
| Q |
1 |
gaagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatggga |
100 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||| || ||||| |
|
|
| T |
41670379 |
gaagagaaacaagaagagcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatgggg |
41670478 |
T |
|
| Q |
101 |
ataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaa |
200 |
Q |
| |
|
|| |||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| | |
|
|
| T |
41670479 |
atcatgaacagcttcatcaatgatatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggaga |
41670578 |
T |
|
| Q |
201 |
ttcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
273 |
Q |
| |
|
| |||||||| || | |||||||| || |||||| | || ||||||||||| ||||| || ||||||||||| |
|
|
| T |
41670579 |
tacagactgctgttcgtcttgttctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt |
41670651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 2 - 293
Target Start/End: Original strand, 40795749 - 40796040
Alignment:
| Q |
2 |
aagagaagcaagaagaatgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaa |
101 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||| ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| | |
|
|
| T |
40795749 |
aagagaaacaagaagagcgtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatgggga |
40795848 |
T |
|
| Q |
102 |
taatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaat |
201 |
Q |
| |
|
| |||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| || | || || |
|
|
| T |
40795849 |
tcatgaacagtttcatcaatgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagat |
40795948 |
T |
|
| Q |
202 |
tcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctt |
293 |
Q |
| |
|
||||||||| || | || |||||||| || ||| | |||||||| ||||| || || || ||||| || || ||||| ||||||||||||| |
|
|
| T |
40795949 |
tcagactgctgttcgtctcgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttacaagctctt |
40796040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
| Q |
171 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
270 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
33216594 |
acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc |
33216693 |
T |
|
| Q |
271 |
tgtgactaagtttac |
285 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
33216694 |
tgtgaccaagtttac |
33216708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 23 - 273
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
| Q |
23 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
122 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || ||||| ||||| || || || ||||| || |||||| ||||| || ||||||||||||||||||| |
|
|
| T |
29391467 |
gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg |
29391566 |
T |
|
| Q |
123 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
222 |
Q |
| |
|
||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || || | | || |
|
|
| T |
29391567 |
atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt |
29391666 |
T |
|
| Q |
223 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
273 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
29391667 |
tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt |
29391717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
| Q |
218 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
296 |
Q |
| |
|
|||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || ||||||||||||| |
|
|
| T |
45576399 |
cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga |
45576477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
| Q |
115 |
catcaatgatatcttcgagaagcttgctcaagaatca |
151 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216558 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
| Q |
171 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| || |
|
|
| T |
47317431 |
acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc |
47317530 |
T |
|
| Q |
271 |
tgtgactaagtttacaagctctta |
294 |
Q |
| |
|
|||||| |||||||| || ||||| |
|
|
| T |
47317531 |
tgtgaccaagtttactagttctta |
47317554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 40180547 - 40180297
Alignment:
| Q |
23 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
122 |
Q |
| |
|
||||| |||||||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || | |
|
|
| T |
40180547 |
gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg |
40180448 |
T |
|
| Q |
123 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
222 |
Q |
| |
|
||||||| ||||| || ||||| ||||| || | | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | || |
|
|
| T |
40180447 |
atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt |
40180348 |
T |
|
| Q |
223 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
273 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
40180347 |
tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt |
40180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
| Q |
115 |
catcaatgatatcttcgagaagcttgctcaagaatca |
151 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47317395 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
| Q |
206 |
actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga |
258 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
14715433 |
actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga |
14715485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
| Q |
23 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
122 |
Q |
| |
|
||||| |||||||| || |||||||| || || ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || | |
|
|
| T |
29684701 |
gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg |
29684800 |
T |
|
| Q |
123 |
atatcttcgagaagcttgctcaagaa |
148 |
Q |
| |
|
||||||| |||| || ||||||||| |
|
|
| T |
29684801 |
atatctttaagaaactcgctcaagaa |
29684826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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