View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10939_low_3 (Length: 673)
Name: NF10939_low_3
Description: NF10939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10939_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 19 - 655
Target Start/End: Original strand, 7036506 - 7037143
Alignment:
| Q |
19 |
cttccttccaccacccaccagtccttcaaattgatctaaatgcaacaagatatctttttgaaataccgaggaaactcctagctaccaaaaccggacactn |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036506 |
cttccttccaccacccaccagtccttcaaattgatctaaatgcaacaagatatctttttgaaataccgaggaaactcctagctaccaaaaccggacacta |
7036605 |
T |
|
| Q |
119 |
nnnnnnn-ggacgagaaaccgattctttaactccacaatctcctacacactgaagggatccttgacctacgactcctcttctaaataagttatctttggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036606 |
aaaaaaaaggacgagaaaccgattctttaactccacaatctcctacacactgaagggatccttgacctacgactcctcttctaaataagttatctttggt |
7036705 |
T |
|
| Q |
218 |
agctattttattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccatgattgattaggaacacttatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036706 |
agctattttattctgaaataatctccaagctaagcacacaacttttaacgggattgatttatgccaagccttcgaccatgattgattaggaacacttatc |
7036805 |
T |
|
| Q |
318 |
aatccctccatcaacattttatacgtttcttttaccgaatacatatttcgtgtgtcctgaacgtgtatatatattgcatatatcgttccaccataccgaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036806 |
aatccctccatcaacattttatacgtttcttttaccgaatacatatttcgtgtgtcttgaacgtgtatatatattgcatatatcgttccaccataccgaa |
7036905 |
T |
|
| Q |
418 |
ttgcctctccaaccctctctaaacaccccatctctttctcaccatatctatttgatagaacactgtaccaatgccaaaaaccctcatttcttaatttcaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036906 |
ttgcctctccaaccctctctaaacaccccatctctttctcaccatatctatttgatagaacactgtaccaatgccaaaaaccctcatttcttaatttcaa |
7037005 |
T |
|
| Q |
518 |
ctttcattttcctagaagggcattaaatccccaaattatttattcccaatccccctcttctattgggaataaaaagagagaaaatagactaggagagctg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7037006 |
ctttcattttcctagaagggcattaaatccccaaattatttattcccaatccccctcttctattgggaataaaaagagagaaaatagactaggagagctg |
7037105 |
T |
|
| Q |
618 |
acaatcctgatttaataataaccatgcaaccactgatg |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7037106 |
acaatcctgatttaataataaccatgcaaccaccgatg |
7037143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 18943225 - 18943316
Alignment:
| Q |
207 |
ttatctttggtagctattttattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccatga |
298 |
Q |
| |
|
|||||||| ||||||| | |||| ||||| | ||||||||| || |||| ||||||| |||| | || ||||||||||||| |||||||||| |
|
|
| T |
18943225 |
ttatcttttgtagctactctattttgaaacactctccaagcaaaacacgaaacttttgacggaactgctttatgccaagccctcgaccatga |
18943316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 24828245 - 24828175
Alignment:
| Q |
226 |
tattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccat |
296 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
24828245 |
tattttgaaataatctccacactaaacatgaaacttttaacgggaccgatttatgccaagcttttgaccat |
24828175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 27119057 - 27119125
Alignment:
| Q |
226 |
tattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgacc |
294 |
Q |
| |
|
|||| ||||||| | ||| | ||||||| | |||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
27119057 |
tattttgaaatagtttcctaactaagcatgaaacttttaacggcactgatttatgtcaagccttcgacc |
27119125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University