View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10939_low_5 (Length: 392)
Name: NF10939_low_5
Description: NF10939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10939_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 40080430 - 40080797
Alignment:
| Q |
19 |
aattaacaagtaatgcaagagtaccagatccaatcatatgtttaa----ggctttgattgatcgagccctctaacaaaagagaacaatgtcatgattttc |
114 |
Q |
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| T |
40080430 |
aattaaaatgtaatgaaagagtactacattcaatcatatgtttgattgaggctttgattgatcgagccctctaacaaaagagaacaatgtcatgattttc |
40080529 |
T |
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| Q |
115 |
aaaatatatttttaaatgaagggaaagttctcattgataacagtcgcaataactatcagaaatactacttgttcaaatnnnnnnn---catcagaaatgc |
211 |
Q |
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| T |
40080530 |
aaaatatttttttaaatgaagggaaagttctcattgataacagtcgcaataactattagaaatactacttgttcaaataaaaaaaaaacatcagaaatgc |
40080629 |
T |
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| Q |
212 |
tatatgaactaatcccatacaaggtgtaaactatatacaagtcaagctcataacacagttcacacctcacaaacaccaaatacaagagaacacaaattca |
311 |
Q |
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| T |
40080630 |
tatatgaactaatcccatacaaggtgtaaactatatacaagtcaagctcataacacagttcacacctcacaaacaccaaatacaagagaacacaaattca |
40080729 |
T |
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| Q |
312 |
ttttcttacacttttatatgatcaattaaaacatccttgctactcagggaattgcacaacttctactt |
379 |
Q |
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| T |
40080730 |
ttttcttacacttttatatgatcaattaaaacatccttgctactcagggaattgcacaacttcaactt |
40080797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 40078862 - 40079093
Alignment:
| Q |
22 |
taacaagtaatgcaagagtaccagatccaatcatatgtttaaggctttgattgatcgagccctctaacaaaagagaacaatgtcatgattttcaaaatat |
121 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40078862 |
taacaagtaatgcaagagtactagatccaatcatatgtttaaggctttgattgatcaagccctctaacaaaagagaacaatgtcatgattttcaaaatat |
40078961 |
T |
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| Q |
122 |
atttttaaatgaagggaaagttctcattgataacagtcgcaataactatcagaaatactacttgttcaaat-nnnnnnncatcagaaatgctatatgaac |
220 |
Q |
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| T |
40078962 |
ttttttaaatgaagggaaagttctcattgataacagtcacgataactatcagaaatactacttgttcaaataaaaaaaacatcagaaatgctatatgaac |
40079061 |
T |
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| Q |
221 |
taatcccatacaaggtgtaaactatatacaag |
252 |
Q |
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| T |
40079062 |
taattccatacaaggtgtaaactatatacaag |
40079093 |
T |
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