View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10939_low_8 (Length: 382)
Name: NF10939_low_8
Description: NF10939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10939_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 21242830 - 21243179
Alignment:
| Q |
21 |
atcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21242830 |
atcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcgtcgttgatgataaacatggatgatgatttagctggggaa |
21242929 |
T |
|
| Q |
121 |
ttaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcga |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21242930 |
ttaaacaatgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcga |
21243029 |
T |
|
| Q |
221 |
tggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaaca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21243030 |
tggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaaca |
21243129 |
T |
|
| Q |
321 |
aagtgtggttgggaaatatgatgtttcttctctgaagagtattgggtctg |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21243130 |
gagtgtggttgggaaatatgatgtttcttctttgaagagtattgggtctg |
21243179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 365
Target Start/End: Original strand, 21258599 - 21258939
Alignment:
| Q |
21 |
atcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21258599 |
atcaggaactacaggagtgagcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgatgataaacatggatgatgatttagcaggggaa |
21258698 |
T |
|
| Q |
121 |
ttaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcga |
220 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | |||||||| | |
|
|
| T |
21258699 |
ttaaat---gtgttcctctgcgttttaccgatgtttcatgtgtttagattggcggttataacatacgcgcagctaaggagaggaagtgcggtggtttcaa |
21258795 |
T |
|
| Q |
221 |
tggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaaca |
320 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| ||||||| |||||| | ||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
21258796 |
cggggagatttgagttagaggg-tttttgaaggtgattgaaaagtatagagtgacaactttgtgggttgtgccatcgatgaatcttgctttggcgaaaca |
21258894 |
T |
|
| Q |
321 |
aagtgtggttgggaaatatgatgtttcttctctgaagagtattgg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21258895 |
gagtgtggttgggaaatatgatgtttcttcgttgaagagtattgg |
21258939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 21254090 - 21254357
Alignment:
| Q |
21 |
atcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaa |
120 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| || || ||||||||| |||| || | |||| ||||| |||||||| ||||||||||| |||||| |
|
|
| T |
21254090 |
atcaggaacaacaggagtgagcaagggcgtgatacttacccacaagaacgtcattgcggtggcgttaatgattaacatggacgatgatttagcaggggaa |
21254189 |
T |
|
| Q |
121 |
ttaaacaacgtgttcatctgcgttttaccgatgttt---catgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggttt |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
21254190 |
ttaaacaacgtgttcttctgcgttttaccgatgtttattcatgtgtttagattggtggttataacatacgcgcagctaaggagaggaagtacggtggttt |
21254289 |
T |
|
| Q |
218 |
cgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtggg |
286 |
Q |
| |
|
| | ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||| |
|
|
| T |
21254290 |
caacggggaggtttgagttagaggg-tttttgaaggtgattgagaagcatagagtgacgaatttgtggg |
21254357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University