View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1093_high_12 (Length: 334)
Name: NF1093_high_12
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_high_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 31 - 334
Target Start/End: Original strand, 10163114 - 10163417
Alignment:
| Q |
31 |
aagttaactgtagttcttcatctaaaggatgaccattctgaatagggacaaatatagatgtgtaaacatgtatctgtgatgcacagtccctgattataca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10163114 |
aagttaactgtagttcttcatctaaaggatgaccattctgaataaggacaaatatagatgtgtaaacaagtatctgtgatgcacagtccctgattataca |
10163213 |
T |
|
| Q |
131 |
aaacattaactaattagaaagtttgcatttcatagcattgattcatacaaatgcaaaattttaacgaactgagaaaaagtaatcaccagttacgtattca |
230 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
10163214 |
aaacattaactaattagaaagttcgcatttcatagcatggattcatacaaatgcaaaattttaacaaactgagtaaaagtaatcaccagttacgtattca |
10163313 |
T |
|
| Q |
231 |
ctcattcaattgaaataatttcaaaaacattcctggagttattaggatcaagatttttacatatttgaccctaaacaccgcacaaacttgattgaaattt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
10163314 |
ctcattcaattgaaataatttcaaaaacattcctggagttattaggatcaagatttttacatatttgaccctaaacaccacacaaacttaattgaaattt |
10163413 |
T |
|
| Q |
331 |
gaca |
334 |
Q |
| |
|
|||| |
|
|
| T |
10163414 |
gaca |
10163417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University