View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1093_high_7 (Length: 405)
Name: NF1093_high_7
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_high_7 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0267 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 13746 - 13924
Alignment:
| Q |
56 |
ctattgatggttctttaattatgttttcctttgatagtttgactattttgttggacaatttcattgtacttattgctagttgttggatcaaattatgtgg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13746 |
ctattgatggttctttaattatgttttccttagatagtttgactattttgttggatgatttcattgtacttgttgctagttgttggatcaaattatgtgg |
13845 |
T |
|
| Q |
156 |
attggatgatgttaattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggttga |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13846 |
attggatgatgttaattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggttga |
13924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 3838265 - 3838443
Alignment:
| Q |
56 |
ctattgatggttctttaattatgttttcctttgatagtttgactattttgttggacaatttcattgtacttattgctagttgttggatcaaattatgtgg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3838265 |
ctattgatggttctttaattatgttttccttagatagtttgactattttgctggatgatttcattgtacttattgctagttgttggatcaaattatgtgg |
3838364 |
T |
|
| Q |
156 |
attggatgatgttaattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggttga |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3838365 |
attggatgatgttaattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggttga |
3838443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 29126796 - 29126957
Alignment:
| Q |
70 |
ttaattatgttttcctttgatagtttgactattttgttggacaatttcattgtacttattg-ctagttgttggatcaaattatgtggattggatgatgtt |
168 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||| || ||||||||||| |||||| ||| || || ||| ||||| |||||||||||| | | |
|
|
| T |
29126796 |
ttaattgtgttttccttaaatagtttgattattttgttagatgatttcattgtatttattgtcta-ttcttagattaaattgtgtggattggattaagac |
29126894 |
T |
|
| Q |
169 |
aattattatgagttaagtttatatttctccacttgctattgatttcatttgctagttgatggtt |
232 |
Q |
| |
|
| |||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
29126895 |
a-ttattatgagttaactttatatttatccacttgcctttgatttcattttctagttgatggtt |
29126957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 33637363 - 33637279
Alignment:
| Q |
50 |
tgatgactattgatggttctttaattatgttttcctttgatagtttgactattttgttggacaatttcattgtacttattgctag |
134 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||| | |||||||| |||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
33637363 |
tgatgactattaatggttccttaattgtgttttcaatagatagtttaactattttgttggatgattcctttgtacttattgctag |
33637279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 33637232 - 33637183
Alignment:
| Q |
171 |
ttattatgagttaagtttatatttctccacttgctattgatttcatttgct |
221 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33637232 |
ttattatgagttaa-tttatattcctccacttgctattgatttcatttgct |
33637183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 13783992 - 13783902
Alignment:
| Q |
77 |
tgttttcctttgatagtttgactattttgttggacaatttcatt-gtacttattgctagttgttggatcaaattatgtggattggatgatg |
166 |
Q |
| |
|
|||||||||| | |||||||| |||||||||| | ||||||| |||||||| ||||||||||||||||| | | |||||||||||||| |
|
|
| T |
13783992 |
tgttttccttagctagtttgagtattttgttgtatgatttcatcagtacttataactagttgttggatcaaagtctttggattggatgatg |
13783902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 13784072 - 13784014
Alignment:
| Q |
50 |
tgatgactattgatggttctttaattatgttttcctttgatagtttgactattttgttg |
108 |
Q |
| |
|
||||| |||| |||||||| |||| | |||||||||| | ||||||||||||||||||| |
|
|
| T |
13784072 |
tgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttg |
13784014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University