View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_1 (Length: 768)
Name: NF1093_low_1
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 90 - 440
Target Start/End: Complemental strand, 4762185 - 4761834
Alignment:
| Q |
90 |
catcatcatttccatgaagaaaacatagagccaatttctggttcatacctataaacaaaacaaatcccacaaattcatcagaaaa-ttccatcacttcca |
188 |
Q |
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| T |
4762185 |
catcatcatttccatgaagaaaacatagagccaatttctggttcatacctataaacaaaacaaatcccacaaattcatcagaaaaattccatcacttcca |
4762086 |
T |
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| Q |
189 |
aaaattagaaaccattaaaattacatatatgcaaaaccactttagatcaaataacacaaaacctaacaggaaaaaagaaataattggttatcctctgcgc |
288 |
Q |
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| T |
4762085 |
aaaattagaaaccattaaaattacatttatgcaaaaccactttagatcaaataacacaaaacctaacaggaaaaaagaaataatcggttatcctttgcgc |
4761986 |
T |
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| Q |
289 |
gcaaatacatcagatttattatacatgtgagaaaatgtataaaacaaacaaacagatagaaagctcatgacgatccactacaaagaaaactatatatgaa |
388 |
Q |
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| T |
4761985 |
gcaaatacatcagatttattatacatgtgagaaaatgtataaaacaaacaaacagatagaaagctcatgacgatccactacaaagaaaactatatatgaa |
4761886 |
T |
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| Q |
389 |
ataaaggaaatcaaccttaaaataagcataaaatatcaaattatgcagaatt |
440 |
Q |
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| T |
4761885 |
ataaaggaaatcaaccttaaaataagcataaaagatcaaattatgcagaatt |
4761834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 513 - 768
Target Start/End: Complemental strand, 4761761 - 4761508
Alignment:
| Q |
513 |
cacgtaacatgtgcagaaaaacttgagtaaattaagaaacctctctatttcatgatgttgaagatagaaaaataataataaaatgaaactttacatttat |
612 |
Q |
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| T |
4761761 |
cacgtaacatgtgcagaaaaacatgagtaaattaagaaacctctctatttcatgatgttgaagatagaaaaataataataaaatgaaactttacatttat |
4761662 |
T |
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| Q |
613 |
agggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacga |
712 |
Q |
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| T |
4761661 |
agggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacga |
4761562 |
T |
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| Q |
713 |
tttcaattgcgtgtatgaatatgtccttttcatagaacaattgggtataaacgcaa |
768 |
Q |
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| T |
4761561 |
tttcaattgcgtgtatga--atgtccttttcattgaacaattgggtataaacgcaa |
4761508 |
T |
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