View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_12 (Length: 463)
Name: NF1093_low_12
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 30 - 455
Target Start/End: Complemental strand, 18845273 - 18844850
Alignment:
| Q |
30 |
catatccgcccctatatgcccttggacattcattaaccaaaccagtgatgaggatgaatcacccaaccatagggtaataataattcatggaaacatgtat |
129 |
Q |
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| T |
18845273 |
catatccgcccctatatgcccttggacattcattaaccaaaccagtgatgaggatgaatcacccaaccatagggtaataat---tcgtggaaacatgtat |
18845177 |
T |
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| Q |
130 |
ttataagagtcacggggatccaatatccatcacatgatttagaaatgcttacaaatcagtggt---caatgcaatggaaagaataagtcacgaatcaaat |
226 |
Q |
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| T |
18845176 |
ttataagagtcacggggatccaatatccatcacatgatttagaaatgcttacaaatcagtagtagtcaatgcaatggaaagaataagtcacgaatcaaat |
18845077 |
T |
|
| Q |
227 |
gtgcttttcttgtcttatacactttgtattggtagcttatagtattattttatcacattaaactattactaagttttggaatgcacgcacttaataataa |
326 |
Q |
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| T |
18845076 |
gtgcttttcttgtcttatacactttgtattggtagcttatagtattattttatcacattaaactattactaagttttggaatgcacgcacttaat---aa |
18844980 |
T |
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| Q |
327 |
tagaatgaaaccaaatggataagacaatctataactggttgagatcttgcgttaatcaagg---attattattcattgtgatgactaaaacacatcgata |
423 |
Q |
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| T |
18844979 |
tagaatgaaaccaaatggataagacaatctataactggttgagatcttgcgttaatcaaggattattattattcattgtgatgactaaa--acattgata |
18844882 |
T |
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| Q |
424 |
atttcacttatatatgtcggtcaacctatgct |
455 |
Q |
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| T |
18844881 |
atttcacttatatatgtcggtcaacctatgct |
18844850 |
T |
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