View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_14 (Length: 441)
Name: NF1093_low_14
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 48167689 - 48167997
Alignment:
| Q |
61 |
gggcatggaagagagcaaggtttttactgatgttagaggaactataggttacatggatccagagtacatgagtaatgccaagttaacttgtgccagtgat |
160 |
Q |
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| T |
48167689 |
gggcatggaagagagcaaggtttttactgatgttagaggaactataggttacatggatccagagtacatgagtaatgccaagttaacttgtgccagtgat |
48167788 |
T |
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| Q |
161 |
gtatatagttttggaattgttgctttgcaaattctgtcaggacagaaagtcatagagttggatcttgatgcaagagatcagctcaccagaaaggtagtac |
260 |
Q |
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| T |
48167789 |
gtatatagttttggaattgttgctttgcaaattctgtcaggacagaaagtcatagagttggatcttgatgcaagagatcagctcaccagaaaggtagtac |
48167888 |
T |
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| Q |
261 |
aattcactcatttacatgacattaaattacactagattatatagtatataattcaactcaattatgtatgcaactttactttttgtaggcaagagatgtg |
360 |
Q |
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| T |
48167889 |
aattcactcatttacatgacattaaattacactagattatatagtatataattcaactcaattatgtatgcaactttactttttgtaggcaagagatgtg |
48167988 |
T |
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| Q |
361 |
agtatggga |
369 |
Q |
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| T |
48167989 |
agtatggga |
48167997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 31581832 - 31581864
Alignment:
| Q |
29 |
aaaatatccattggatttgaatgcaacagctag |
61 |
Q |
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| T |
31581832 |
aaaatatccattggatttgaatgcaacagctag |
31581864 |
T |
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