View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_19 (Length: 402)
Name: NF1093_low_19
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 382
Target Start/End: Complemental strand, 21405982 - 21405630
Alignment:
| Q |
30 |
ctaagatcataacatgtgtctaaaattgaaaccgctggagcaactggatacttcgtcatgccttttttgaaggaatctcggaggctagcataggcagttg |
129 |
Q |
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| T |
21405982 |
ctaagatcataacatgtgtctaaaattgaaaccgctggagcaactggatacttcgtcatgccttttttgaaggaatctcggaggctagcataggcagtcg |
21405883 |
T |
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| Q |
130 |
gaggcagccgtgtaataacggtaccagagtcgataatggcaccaccggaggagaaaatagaggatgagattggaagcttggttccaccaacgctgattcc |
229 |
Q |
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| T |
21405882 |
gaggcagccgtgtaataacggtaccagagtcgataatggcaccaccggaggagaaaatagaggatgagattggaagcttggttccaccaacgctgattcc |
21405783 |
T |
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| Q |
230 |
ggcaatgtcaaggccgtagaaggaattgctccgggagacagtggagaaggaagtgtattttacatacttgttatcggaggcgccaaatgtgaggtggcca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21405782 |
ggcaatgtcaaggccgtagaaggaattgctccgggagacagtggagaaggaagtgtattttacgtacttgttatcggaggcgccaaatgtgaggtggcca |
21405683 |
T |
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| Q |
330 |
acgccgctagatgtggagggaagacaatacgagaaagttttttgatatttttg |
382 |
Q |
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| T |
21405682 |
acgccgctagatgtggagggaagacaatacgagaaagttttttggtatttttg |
21405630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 111 - 289
Target Start/End: Complemental strand, 21379261 - 21379083
Alignment:
| Q |
111 |
aggctagcataggcagttggaggcagccgtgtaataacggtaccagagtcgataatggcaccaccggaggagaaaatagaggatgagattggaagcttgg |
210 |
Q |
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||||||||||||| || ||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||| |
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| T |
21379261 |
aggctagcataggtagatggtggcagccgtgtaatgacggtaccagagtcaataatggcgccaccggaggagaaaatagaggatgatattgaaagcttgg |
21379162 |
T |
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| Q |
211 |
ttccaccaacgctgattccggcaatgtcaaggccgtagaaggaattgctccgggagacagtggagaaggaagtgtattt |
289 |
Q |
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|| ||| |||||||| | |||||||| |||||||||||||| || || |||| ||||| |||| ||||||||| |
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| T |
21379161 |
ttttggcaatactgattccaacgatgtcaagaccgtagaaggaattactacgtgagattgtggataagggagtgtattt |
21379083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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