View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_21 (Length: 367)
Name: NF1093_low_21
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 380984 - 380872
Alignment:
| Q |
70 |
tatgtaacttacgagtgttggaagcggtgatgacatttgttgcagcggaaaagtttgtgagtgaaaccaacgtcaccacacatgcagcatacaacttgac |
169 |
Q |
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| T |
380984 |
tatgtaacttacgagtgttggaagcggtgatgacatttgttgcagcggaaaagtttgtgagtgaaaccaacgtcaccacacatgcagcatacaacttgac |
380885 |
T |
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| Q |
170 |
gatccaccatatt |
182 |
Q |
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| T |
380884 |
gatccaccatatt |
380872 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 357
Target Start/End: Complemental strand, 380784 - 380675
Alignment:
| Q |
257 |
atatatagaccataggttgctgccagtccttttcagttaaggcag---------gaagaagaagtaccttaaaaaagaaatggaatagtaaaagacatgt |
347 |
Q |
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| T |
380784 |
atatatagaccataggttgctggcagtccttttcagttaaggcagtagaaaaaggaagaagaagaaccttaaaaaagaaatggaataataaaagacattt |
380685 |
T |
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| Q |
348 |
ttgcccctat |
357 |
Q |
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| T |
380684 |
ttgcccctat |
380675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 10163114 - 10163174
Alignment:
| Q |
8 |
aagttaactgtagttcttcatctaaaggatgaccattctgaatagggacaaatatagatgt |
68 |
Q |
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| T |
10163114 |
aagttaactgtagttcttcatctaaaggatgaccattctgaataaggacaaatatagatgt |
10163174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 15334875 - 15334951
Alignment:
| Q |
79 |
tacgagtgttggaagcggtgatgacatttgttgcagcggaaaagtttgtgagtgaaaccaacgtcaccacacatgca |
155 |
Q |
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| T |
15334875 |
tacgagtgttggaatcggtggcggcatttgttgcaacggaaaagcttgtcaggaaaaccaacatcaccacacatgca |
15334951 |
T |
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