View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_24 (Length: 323)
Name: NF1093_low_24
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 3783168 - 3783428
Alignment:
| Q |
1 |
atgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatgg |
100 |
Q |
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| T |
3783168 |
atgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctggattcgctatctgcctcacgtttaaccacattgcaggtgatgg |
3783267 |
T |
|
| Q |
101 |
aaaatcacttcaccaattcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatctt |
200 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3783268 |
aaaatcacttcaccaattcatgaaactctggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctcttgatctt |
3783367 |
T |
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| Q |
201 |
cttccttcacatgaaagagatagagttagagacccaaagaatcttaaactcacctacttac |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3783368 |
cttccttcacatgaaagagatagagttagagacccaaagaatcttaaactcacctacttac |
3783428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 37915076 - 37915281
Alignment:
| Q |
18 |
cctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaatcacttcaccaat |
117 |
Q |
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| T |
37915076 |
cctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatt |
37915175 |
T |
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| Q |
118 |
tcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatcttcttccttcacatgaaag |
217 |
Q |
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| T |
37915176 |
tcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttga---tcttccttcccatgaaag |
37915272 |
T |
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| Q |
218 |
agatagagt |
226 |
Q |
| |
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||||||||| |
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| T |
37915273 |
agatagagt |
37915281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 37961012 - 37960935
Alignment:
| Q |
158 |
caacaacagtttatctctagaacactctctgcctcttgatcttcttccttcacatgaaagagatagagttagagacccaaa |
238 |
Q |
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|||||| | ||| ||||| ||| |||||| |||||||||||||| |||||||||||||||||||||||| ||| ||||| |
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| T |
37961012 |
caacaataatttgtctcttgaatactctccgcctcttgatcttc---cttcacatgaaagagatagagttaaagatccaaa |
37960935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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