View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_29 (Length: 285)
Name: NF1093_low_29
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 38040943 - 38041115
Alignment:
| Q |
76 |
tgtagttcatgtttatattgttgtaaactcttatacttcttgtacttgttaagttttaatagtattattgctcaaacaaagttttaatagtattaatctc |
175 |
Q |
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| T |
38040943 |
tgtagttcatgtttatattgttgtaaactcttatacttcttgtacttgttaagttttaatagtattattgctcaaacaaagttttaatagtattaatctc |
38041042 |
T |
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| Q |
176 |
ctctgnnnnnnnnttaatattaatctcttttgctttgnnnnnnnnccattatcatgtcttttataacatgctg |
248 |
Q |
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| T |
38041043 |
ctatgaaaaaaaattaatattaatctcttttgctttgaaaaaaaaccattatcatgtcttttataacatgctg |
38041115 |
T |
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Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 31841358 - 31841533
Alignment:
| Q |
76 |
tgtagttcatgtttatattgttgtaaactcttat---acttcttgtacttgttaagttttaatagtattattgctcaaacaaagttttaatagtattaat |
172 |
Q |
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| T |
31841358 |
tgtagctcatgtttatattgttgtaaattcttcttccacttcttgtacttgttaagttttaatagtatttttgctcaaacaaagttttaataatattaat |
31841457 |
T |
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| Q |
173 |
ctcctctgnnnnnnnnttaatattaatctcttttgctttg--nnnnnnnnccattatcatgtcttttataacatgct |
247 |
Q |
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| T |
31841458 |
ctcctctg-aaaaaacttaatattaatctcttttgctttgaaaaaaaaaaccattatcatgtcttttataacatgct |
31841533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 31837325 - 31837432
Alignment:
| Q |
76 |
tgtagttcatgtttatattgttgtaaactcttat---acttcttgtacttgttaagttttaatagtattattgctcaaacaaagttttaatagtattaat |
172 |
Q |
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||||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
31837325 |
tgtagctcatgtttatattgttgtaaattcttcttccacttcttgtacttgttaagttttaatagtatttttgctcaaacaaagttgtaatagtattaat |
31837424 |
T |
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| Q |
173 |
ctcctctg |
180 |
Q |
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|||||||| |
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| T |
31837425 |
ctcctctg |
31837432 |
T |
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