View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1093_low_3 (Length: 556)

Name: NF1093_low_3
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1093_low_3
NF1093_low_3
[»] chr2 (12 HSPs)
chr2 (349-533)||(33732569-33732760)
chr2 (349-530)||(44958116-44958305)
chr2 (349-533)||(16089822-16090012)
chr2 (352-533)||(3830900-3831086)
chr2 (370-533)||(14572995-14573166)
chr2 (349-533)||(37498862-37499056)
chr2 (349-533)||(36315561-36315753)
chr2 (349-533)||(6376238-6376424)
chr2 (348-533)||(37914235-37914427)
chr2 (408-533)||(24137151-24137287)
chr2 (39-87)||(1976846-1976894)
chr2 (41-109)||(43501156-43501224)
[»] chr4 (14 HSPs)
chr4 (349-533)||(28093095-28093287)
chr4 (349-533)||(49243815-49244006)
chr4 (346-533)||(21390952-21391146)
chr4 (349-533)||(3672274-3672466)
chr4 (349-533)||(7217765-7217957)
chr4 (349-533)||(6112630-6112821)
chr4 (349-533)||(44275706-44275897)
chr4 (351-533)||(35544912-35545102)
chr4 (349-533)||(46192359-46192551)
chr4 (349-533)||(45829257-45829448)
chr4 (411-528)||(51038768-51038893)
chr4 (487-529)||(43245522-43245564)
chr4 (456-533)||(52191314-52191391)
chr4 (39-87)||(55927752-55927800)
[»] chr3 (21 HSPs)
chr3 (349-533)||(21559561-21559753)
chr3 (349-533)||(34749897-34750089)
chr3 (347-529)||(46111941-46112131)
chr3 (350-534)||(22894679-22894870)
chr3 (349-533)||(51339783-51339972)
chr3 (349-538)||(43999984-44000181)
chr3 (349-533)||(30735495-30735686)
chr3 (351-533)||(36749406-36749596)
chr3 (349-530)||(48200688-48200877)
chr3 (349-533)||(36370337-36370529)
chr3 (347-533)||(38231293-38231486)
chr3 (349-448)||(29472901-29473000)
chr3 (456-533)||(29460660-29460737)
chr3 (456-533)||(29471512-29471589)
chr3 (346-533)||(39072275-39072464)
chr3 (348-525)||(20856152-20856334)
chr3 (349-533)||(39467101-39467292)
chr3 (349-533)||(50966131-50966310)
chr3 (349-533)||(51069266-51069445)
chr3 (408-511)||(53638157-53638267)
chr3 (39-87)||(38332536-38332584)
[»] chr8 (14 HSPs)
chr8 (349-533)||(30432339-30432530)
chr8 (349-533)||(36189216-36189406)
chr8 (357-532)||(44081781-44081964)
chr8 (349-533)||(31318805-31318997)
chr8 (349-530)||(18184556-18184744)
chr8 (349-533)||(42162598-42162790)
chr8 (349-530)||(12665347-12665537)
chr8 (346-529)||(10203668-10203859)
chr8 (349-529)||(43186031-43186218)
chr8 (347-527)||(33726017-33726205)
chr8 (456-512)||(42668895-42668951)
chr8 (456-528)||(31561-31633)
chr8 (469-528)||(3690729-3690788)
chr8 (41-104)||(16972048-16972113)
[»] chr6 (7 HSPs)
chr6 (349-533)||(3986905-3987096)
chr6 (349-533)||(3118046-3118238)
chr6 (349-533)||(13697569-13697759)
chr6 (350-533)||(14022934-14023124)
chr6 (349-533)||(24208444-24208635)
chr6 (349-533)||(15345659-15345848)
chr6 (39-85)||(882743-882789)
[»] chr7 (26 HSPs)
chr7 (347-533)||(36346562-36346755)
chr7 (349-533)||(26972202-26972394)
chr7 (349-533)||(28307494-28307686)
chr7 (349-527)||(31148296-31148481)
chr7 (349-530)||(34828069-34828256)
chr7 (349-533)||(42220963-42221154)
chr7 (348-533)||(7699881-7700074)
chr7 (348-533)||(7700079-7700272)
chr7 (348-533)||(7700277-7700470)
chr7 (348-533)||(7700475-7700668)
chr7 (349-533)||(34108426-34108618)
chr7 (351-533)||(30887700-30887890)
chr7 (349-533)||(45782659-45782851)
chr7 (349-535)||(5811163-5811356)
chr7 (349-533)||(13108148-13108338)
chr7 (351-529)||(21807324-21807509)
chr7 (409-527)||(23980137-23980262)
chr7 (349-515)||(36957447-36957619)
chr7 (349-455)||(46475109-46475216)
chr7 (349-442)||(29953571-29953665)
chr7 (456-528)||(38321014-38321086)
chr7 (411-533)||(15020282-15020408)
chr7 (411-498)||(20086690-20086784)
chr7 (468-499)||(29953661-29953692)
chr7 (349-424)||(42950036-42950111)
chr7 (39-87)||(40561740-40561788)
[»] chr5 (17 HSPs)
chr5 (347-533)||(39370927-39371121)
chr5 (349-533)||(40887941-40888133)
chr5 (347-533)||(2237276-2237470)
chr5 (349-533)||(13347128-13347320)
chr5 (348-533)||(1815618-1815807)
chr5 (349-522)||(14831555-14831736)
chr5 (369-533)||(9408058-9408230)
chr5 (352-533)||(27553376-27553564)
chr5 (349-496)||(31800595-31800749)
chr5 (456-535)||(33404550-33404629)
chr5 (349-455)||(42683684-42683791)
chr5 (350-533)||(4300544-4300734)
chr5 (408-533)||(17225319-17225449)
chr5 (349-533)||(19596067-19596258)
chr5 (409-529)||(19124532-19124657)
chr5 (414-524)||(41003915-41004031)
chr5 (456-530)||(12164254-12164328)
[»] chr1 (10 HSPs)
chr1 (349-535)||(34307137-34307331)
chr1 (351-533)||(39249864-39250054)
chr1 (349-529)||(2509028-2509216)
chr1 (349-533)||(46901734-46901926)
chr1 (346-533)||(19258669-19258863)
chr1 (349-533)||(28647353-28647544)
chr1 (456-528)||(10146971-10147043)
chr1 (41-84)||(1514401-1514444)
chr1 (53-87)||(27500340-27500374)
chr1 (456-529)||(29099821-29099893)
[»] scaffold0062 (1 HSPs)
scaffold0062 (346-529)||(6722-6913)
[»] scaffold0043 (1 HSPs)
scaffold0043 (349-529)||(87162-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (468-506)||(5943-5981)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 33732760 - 33732569
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||| |||||    
T  33732760 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttc 33732661  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33732660 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 349 - 530
Target Start/End: Complemental strand, 44958305 - 44958116
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  44958305 ggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 530  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44958205 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 16090012 - 16089822
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||  ||||     
T  16090012 ggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt- 16089914  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16089913 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctc 16089822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 352 - 533
Target Start/End: Original strand, 3830900 - 3831086
Alignment:
Q  352 aaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatc 451  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||| ||  |||||| ||||||||||||||||| || ||||||  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  452 tctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||       ||||||| ||||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctc 3831086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 370 - 533
Target Start/End: Complemental strand, 14573166 - 14572995
Alignment:
Q  370 atttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttt 461  Q
    ||||| |||||||| |||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||| ||||||||       ||||||    
T  14573166 attttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttt 14573067  T
Q  462 taccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    | | ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||    
T  14573066 tgctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagagctc 14572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 37498862 - 37499056
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacc--catt 445  Q
    ||||||||||||||||||| | ||||| ||||||| |||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||  | ||    
T  37498862 ggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||||       ||||||| |||| ||||||||||||||||| |||||||||| |||||||||  |||||||||| || |||||||||||    
T  37498962 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctc 37499056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 36315753 - 36315561
Alignment:
Q  349 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||| |||||  ||||||| |||||||||||| ||||| |   |||||||||| | |||| |||||| || ||||||  ||||    
T  36315753 ggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttt 36315654  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36315653 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 6376238 - 6376424
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||||| ||||| ||||||| |  ||||||| | ||||| ||   |||||||||||||||| |||||| ||| ||||||||||||    
T  6376238 ggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttc 6376337  T
Q  449 atctctttgtt--tttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||  ||   |  |||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||    
T  6376338 atctcttctttcaatggccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 348 - 533
Target Start/End: Original strand, 37914235 - 37914427
Alignment:
Q  348 tggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattt 446  Q
    |||||||||||||||||||| | |||||  ||||||| |||||||||||||||||||  | |||||||||| | |||| |||||| || ||||||| |||    
T  37914235 tggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtac-cagggtattttaatcatttcacatcacattatcaccccttt 37914333  T
Q  447 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    | |||||||       ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  37914334 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctc 37914427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 533
Target Start/End: Original strand, 24137151 - 24137287
Alignment:
Q  408 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggt----gtaaaagg 496  Q
    ||||||||||||||||| |||||| ||| ||| || ||||||||||||       |||||||  ||| ||||||||||||||||||||    || |||||    
T  24137151 gggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaagg 24137250  T
Q  497 gtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||| ||||||||| ||||| |||||||| |||||    
T  24137251 gtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 1976846 - 1976894
Alignment:
Q  39 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttgagt 87  Q
    |||||||| |||| |||||| |||| |||||| ||||||||||||||||    
T  1976846 tatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagt 1976894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 43501224 - 43501156
Alignment:
Q  41 tgtttgaataccttcatgcaaaaatgagttgaacaataaatttgagtaagaatcaattctaaaagcaaa 109  Q
    |||||| |||| |||||| |||| |||||||||  |||| |||| || |||||||||||||||| ||||    
T  43501224 tgtttgtatacattcatgtaaaactgagttgaattataattttgtgttagaatcaattctaaaatcaaa 43501156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 28093095 - 28093287
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||| |||||||  |||||||| |||| ||||||||||||||||||||| ||||    
T  28093095 ggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28093195 catctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 28093287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 49244006 - 49243815
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 346 - 533
Target Start/End: Original strand, 21390952 - 21391146
Alignment:
Q  346 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 445  Q
    |||||||||||||||||||||| | |||||||||||||  ||||||||||| ||||| ||  |||||||||||||||||||||||||||  |||| ||||    
T  21390952 tatggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcatt 21391051  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||||       | ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  21391052 ttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 21391146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 3672466 - 3672274
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||| | | ||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 7217957 - 7217765
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||| ||| | ||||||||||||| ||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||| ||||    
T  7217957 ggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
     |||||||       ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  7217857 tatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctc 7217765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 6112821 - 6112630
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    |||||||||||||||||||   ||||||||||||  ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| || |||||    
T  6112821 ggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttc 6112722  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       ||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6112721 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctc 6112630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 44275897 - 44275706
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    |||||||||||| |||||| | ||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||     
T  44275897 ggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttta 44275798  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       | |||||  ||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||    
T  44275797 atctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctc 44275706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 351 - 533
Target Start/End: Complemental strand, 35545102 - 35544912
Alignment:
Q  351 aaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggta-ttttagtaattttacatcatatcatcacccattttca 449  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||||||||||||||||||||| |||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  450 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    | ||||       ||||||| |||||| |||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctc 35544912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 46192551 - 46192359
Alignment:
Q  349 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | |||||  ||||||| |||||||||||||||||||    |||||||||| | |||| |||||| || ||||||| ||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctc 46192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 45829257 - 45829448
Alignment:
Q  349 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | |||||  |||||||  ||||||||||||||| |     |||||||||| | |||| |||||| || ||||||| ||||    
T  45829257 ggaaaaagataggtagacacccttttttgatacacct-ttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcacccctttt 45829355  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||  ||||||||||||||||||||    
T  45829356 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 528
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  411 tattttagtaattttacatcatatcatcaccca-ttttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 502  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||       |||||||  ||| |||||||| ||||||||||||| ||||  |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  503 gccacctaagatggttcatgtataag 528  Q
    |||||||||| |||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 43245564 - 43245522
Alignment:
Q  487 gtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  43245564 gtgtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 533
Target Start/End: Original strand, 52191314 - 52191391
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||  ||| |||||||| | ||||||| ||| ||| ||| ||||||||||||| |||| |||||||||| ||||    
T  52191314 tgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctc 52191391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 55927752 - 55927800
Alignment:
Q  39 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttgagt 87  Q
    |||||||| |||| |||||| |||| ||| |||||||||||||||||||    
T  55927752 tatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagt 55927800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 21559753 - 21559561
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||| |||| ||  |||||||||||||||||||||||||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 21559561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 34749897 - 34750089
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||  ||||||| ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  34749897 ggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34749997 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 347 - 529
Target Start/End: Original strand, 46111941 - 46112131
Alignment:
Q  347 atggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 445  Q
    ||||||||||||||||||||| |||||||||||||||  |||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||    
T  46111941 atggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttt 46112040  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    ||||||||||       ||||||| |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  46112041 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataaga 46112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 350 - 534
Target Start/End: Complemental strand, 22894870 - 22894679
Alignment:
Q  350 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||| |||||| | |||| |||||||  ||||||||||||| ||||||||  |||||||| ||||||| ||||||||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcc 534  Q
    |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcc 22894679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 51339783 - 51339972
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  ||||| ||   |||||||||||||||||||||||||||||||||| |||||    
T  51339783 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttc 51339882  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       ||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  51339883 atctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctc 51339972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 349 - 538
Target Start/End: Complemental strand, 44000181 - 43999984
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    |||||||||||||||||||   ||||||||||||   |||||||| ||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||    
T  44000181 ggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctccattc 538  Q
    ||||||||       ||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  44000081 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctctattc 43999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 30735495 - 30735686
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggta-ttttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||| ||||||||||||||||| ||||    
T  30735495 ggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccc-tttt 30735593  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
     || ||||       ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  30735594 tatatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctc 30735686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 351 - 533
Target Start/End: Complemental strand, 36749596 - 36749406
Alignment:
Q  351 aaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttca 449  Q
    |||||||||||||||||   ||||||||||||   |||||||||||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  450 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||       ||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctc 36749406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 349 - 530
Target Start/End: Complemental strand, 48200877 - 48200688
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| || ||||    
T  48200877 ggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 530  Q
    ||||||||       | ||||| ||||||||||||||| | ||||| ||||||| |||||||||||||||||||| |||||| |||||||    
T  48200777 catctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 36370337 - 36370529
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||| |   ||||||||||||   |||| ||||||| ||||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       |||||||  ||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctc 36370529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 347 - 533
Target Start/End: Complemental strand, 38231486 - 38231293
Alignment:
Q  347 atggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 445  Q
    ||||||||||||||||||||||| |||||  ||||||| |||||||||||||||||| |   ||||| |||||| |||| |||| | || || ||| |||    
T  38231486 atggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacc-att 38231388  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||| ||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38231387 ttcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 349 - 448
Target Start/End: Complemental strand, 29473000 - 29472901
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  29473000 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 456 - 533
Target Start/End: Complemental strand, 29460737 - 29460660
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29460737 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 456 - 533
Target Start/End: Complemental strand, 29471589 - 29471512
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29471589 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 346 - 533
Target Start/End: Original strand, 39072275 - 39072464
Alignment:
Q  346 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 445  Q
    ||||||||||||||||||||||   ||||| ||||| |  | ||||||||||||||| |   ||||||||||||||     ||||| |||||||||||||    
T  39072275 tatggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccatt 39072369  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||||       ||||| | |||| |||||||||||| |||||||||||||||||||||| || ||||| || ||||||||||| |||||    
T  39072370 ttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctc 39072464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 525
Target Start/End: Original strand, 20856152 - 20856334
Alignment:
Q  348 tggaaaaagataggtagacatcatttt-tcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattt 446  Q
    |||||||||||||  | ||||| |||| | ||||||| || ||||||||||||||| |   |||||||| |||||||||| |||| ||||||| || |||    
T  20856152 tggaaaaagatagacaaacatctttttgttatacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatcctttt 20856250  T
Q  447 tc-atctcttt----gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 525  Q
    |  |||| |||    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  20856251 tatatctttttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 39467101 - 39467292
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||| ||| | ||||| ||||||| |  ||||||||| ||||| || ||| |||||||||||||| | |||| ||| |||||| |||||    
T  39467101 ggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttc 39467200  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       | |||||  ||| |||||||||| |||||||||||||||||||||||| || ||| | ||||| ||| |||| |||||    
T  39467201 atctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctc 39467292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 50966310 - 50966131
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||| |||||  ||||         ||||||||||||||| ||||||||   | ||||    
T  50966310 ggaaaaagataggtagacattctttttcatacacctcttatgtacatccccaaatatt---------ttagtaattttacattatatcatc---cttttt 50966223  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  50966222 catctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtataagagctc 50966131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 51069445 - 51069266
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||| |||||  ||||         ||||||||||||||| ||||||||   | ||||    
T  51069445 ggaaaaagataggtagacattctttttcatacacctcttatgtacatccccaaatatt---------ttagtaattttacattatatcatc---cttttt 51069358  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  51069357 catctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtataagagctc 51069266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 408 - 511
Target Start/End: Complemental strand, 53638267 - 53638157
Alignment:
Q  408 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 500  Q
    ||||||||||| |||||||||||| ||||||||||  | |||||||||       |||||||||||| |||||| | ||||||||||||| |||||||||    
T  53638267 gggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgt 53638168  T
Q  501 atgccacctaa 511  Q
    |||||||||||    
T  53638167 atgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 38332536 - 38332584
Alignment:
Q  39 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttgagt 87  Q
    |||||||| |||| |||||| | ||||||||||||||||||||||||||    
T  38332536 tatgtttgtatacattcatggataaatgagttgaacaataaatttgagt 38332584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 30432530 - 30432339
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    |||||||||| | |||||| | ||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||    
T  30432530 ggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttc 30432431  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  30432430 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 36189406 - 36189216
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| || | ||  |||||||||| |||||||| ||||||||||||| | |||||    
T  36189406 ggaaaaagataggtagacaccctttttcatacaccacttatgtacaccc-atatgttaggggtattttaataattttatatcatatcatcactccttttc 36189308  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36189307 atctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 44081964 - 44081781
Alignment:
Q  357 ataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt 455  Q
    ||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  456 -------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 532  Q
           ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 31318997 - 31318805
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||| |||||||  | |||||| |||||||||||||||||||||||||| ||||    
T  31318997 ggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       ||||||| ||||||||||||||||||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||    
T  31318897 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctc 31318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 349 - 530
Target Start/End: Complemental strand, 18184744 - 18184556
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||| ||||| ||  ||||||||||||||||||| ||||||||||||||| |||||    
T  18184744 ggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttc 18184645  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 530  Q
    |||||||       |||||| |||||||||||||||| ||||||| |||||||||||||||| ||| |||| |||||||| ||||||||    
T  18184644 atctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 42162790 - 42162598
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    |||||||||||||||||||   ||||||||||||   ||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       |||||||  |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 349 - 530
Target Start/End: Complemental strand, 12665537 - 12665347
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcaccc-attt 446  Q
    ||||||||||||||||||||| |||||| |||||| |||||||| |||| ||||| ||  |||||||||||||||||||||||||||||||||||  |||    
T  12665537 ggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T
Q  447 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 530  Q
    | |||||||       ||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  12665437 ttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 346 - 529
Target Start/End: Complemental strand, 10203859 - 10203668
Alignment:
Q  346 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccat 444  Q
    |||||||||||||||||||||| | ||||||||||| | ||||||||||||| ||||||||  || |||||||||||||||| ||||||||| ||||| |    
T  10203859 tatggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctt 10203760  T
Q  445 tttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    |||||||||||       | |||||  |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  10203759 tttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 10203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 349 - 529
Target Start/End: Complemental strand, 43186218 - 43186031
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||  ||| |||| |||||||||| ||||||||||||||  |||||    
T  43186218 ggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttc 43186119  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    |||| ||       ||||||| |||| | |||||||||||||  |||||||||| || ||||||||||||  ||||| ||||||||||    
T  43186118 atcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataaga 43186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 347 - 527
Target Start/End: Complemental strand, 33726205 - 33726017
Alignment:
Q  347 atggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcaccca-tt 445  Q
    ||||||||||||||||||||| | ||||| ||||||| |  ||||||||  ||||| ||  ||||||||||||||||| |||||| ||| ||| ||| ||    
T  33726205 atggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactt 33726106  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 527  Q
    ||||||||||       ||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||  ||||| ||||||||    
T  33726105 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 42668895 - 42668951
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 512  Q
    ||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  42668895 tgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacctaag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 528
Target Start/End: Original strand, 31561 - 31633
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 528  Q
    ||||||| |||| |||||||| ||| ||||||||| |||| |||||||| |||||||||||| ||| ||||||    
T  31561 tgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 528
Target Start/End: Original strand, 3690729 - 3690788
Alignment:
Q  469 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 528  Q
    |||||||| ||||||||| | | ||||| |||||| ||||||||||| ||||||||||||    
T  3690729 tgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 16972048 - 16972113
Alignment:
Q  41 tgtttgaataccttcatgcaaaaatgagttgaacaataaatttgag--taagaatcaattctaaaa 104  Q
    ||||||||||| |||||| |||| ||| |||||||||||||||| |  ||| ||||||||||||||    
T  16972048 tgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaa 16972113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 3986905 - 3987096
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    |||||||||||||||||||||||||||||||||    ||||||| ||||||||||||  |||||||| |||||||||||||||||| |||| || |||||    
T  3986905 ggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttc 3987004  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3987005 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3987096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 3118046 - 3118238
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||| ||||| ||||    
T  3118046 ggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
     |||| ||       ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  3118146 tatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctc 3118238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 13697759 - 13697569
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||   | |||||||||||||||| ||||||||||||||| |||||    
T  13697759 ggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttc 13697660  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       |||||||||||||| |||||||||||| | |||||||||||||| ||| || ||||||||||| ||||||||||||||    
T  13697659 atctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 350 - 533
Target Start/End: Complemental strand, 14023124 - 14022934
Alignment:
Q  350 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 449  Q
    |||||||||||||||||| | ||||| ||||||| |  ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| || |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  450 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 24208635 - 24208444
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||||| ||||| ||||||| || || |||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| |||||    
T  24208635 ggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttc 24208536  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||       ||||||| |||| | ||||||||||||||||||||||||  |||||| ||||||| ||||||| |||||||| |||||    
T  24208535 atctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 15345659 - 15345848
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||| |||||||  ||| |||| |||||||| | ||||||||||||||  |||||    
T  15345659 ggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttc 15345758  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||| ||       ||||||| ||||||||||||||  ||| |||||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  15345759 atcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctc 15345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 882789 - 882743
Alignment:
Q  39 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttga 85  Q
    |||||||| |||| ||||||||||| |||||| ||||||||||||||    
T  882789 tatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 347 - 533
Target Start/End: Original strand, 36346562 - 36346755
Alignment:
Q  347 atggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatt 445  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||| || ||    
T  36346562 atggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttt 36346660  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||||       ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36346661 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 36346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 26972202 - 26972394
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  26972202 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  448 catctct-------ttgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||        ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26972302 catctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 26972394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 28307494 - 28307686
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| || | ||  ||||||||||||||||||||||||||||||||||| ||||    
T  28307494 ggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  28307594 catctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 527
Target Start/End: Complemental strand, 31148481 - 31148296
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    |||||||||||||||||||   ||||||||||||| |||||  ||||||||| | ||  |  ||||||||||||||||||||||||||||||||||||||    
T  31148481 ggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttc 31148382  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 527  Q
    |||||||       ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31148381 atctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 349 - 530
Target Start/End: Complemental strand, 34828256 - 34828069
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||  |||||||||||||||||||||||||||||||| |  |||||    
T  34828256 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttc 34828157  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 530  Q
    |||||||       ||||||| ||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||||||||    
T  34828156 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 42220963 - 42221154
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||||||| |||||||| ||||||||||||||||| ||||    
T  42220963 ggaaaaagataggtagacacc-tttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttt 42221061  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
     || ||||       ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  42221062 tatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 348 - 533
Target Start/End: Original strand, 7699881 - 7700074
Alignment:
Q  348 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 446  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7699881 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7699980  T
Q  447 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7699981 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 348 - 533
Target Start/End: Original strand, 7700079 - 7700272
Alignment:
Q  348 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 446  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700079 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700178  T
Q  447 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700179 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 348 - 533
Target Start/End: Original strand, 7700277 - 7700470
Alignment:
Q  348 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 446  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700277 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700376  T
Q  447 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700377 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 348 - 533
Target Start/End: Original strand, 7700475 - 7700668
Alignment:
Q  348 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 446  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700475 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700574  T
Q  447 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700575 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 34108618 - 34108426
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||| ||| | ||||||||||||  ||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  34108618 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       |||||||  ||  |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  34108518 catctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 351 - 533
Target Start/End: Complemental strand, 30887890 - 30887700
Alignment:
Q  351 aaaaagataggta-gacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 449  Q
    ||||||||| ||| |||| | ||||||||||||  ||||| |||||||||||||||   ||||||| |||||||||||||||||||||||||| ||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttca 30887791  T
Q  450 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||       ||||||| | ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  30887790 tctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 45782659 - 45782851
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | ||||| ||||||   |||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  45782659 ggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       |||||||  |||||||||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||||||||    
T  45782759 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 349 - 535
Target Start/End: Original strand, 5811163 - 5811356
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||| | ||||| ||||||| |  ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| |||||    
T  5811163 ggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttc 5811262  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 535  Q
    |||||||       ||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||| | ||||| |||||||| |||||||    
T  5811263 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctcca 5811356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 13108338 - 13108148
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||| | ||||| |||||||  | ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||| |    
T  13108338 ggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-c 13108240  T
Q  449 atctcttt-------gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||        |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  13108239 atctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 351 - 529
Target Start/End: Original strand, 21807324 - 21807509
Alignment:
Q  351 aaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcat 450  Q
    |||||||||||| |||| | ||||| ||||||  || || ||||||||| || ||  ||||||||||||||||| |||| | ||||||| ||||||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcat 21807423  T
Q  451 ctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    |||||       | ||||| |||| | |||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  21807424 ctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 409 - 527
Target Start/End: Complemental strand, 23980262 - 23980137
Alignment:
Q  409 ggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 501  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||||||       ||||||| |||| |||||||||||||||||||||||||||||||||    
T  23980262 ggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgta 23980163  T
Q  502 tgccacctaagatggttcatgtataa 527  Q
    ||||||||| | ||||| ||||||||    
T  23980162 tgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 36957619 - 36957447
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    |||||||||||||||||||  |||||| |||||||  | || ||||||| |||| ||  |||||||||||||||||||||| | || |||| ||||||||    
T  36957619 ggaaaaagataggtagacacaattttttatacacctttcatatacaccc-atgtgttgggggtattttagtaattttacattacattatcatccattttc 36957521  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatg 515  Q
    |||||||       | |||||  |||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  36957520 atctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaagatg 36957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 349 - 455
Target Start/End: Complemental strand, 46475216 - 46475109
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctggg-tattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | ||||| ||||||| || ||||||| | ||||| || |||| |||||||||||||| |||||| ||| |||||| ||||    
T  46475216 ggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccctttt 46475117  T
Q  448 catctctt 455  Q
    ||||||||    
T  46475116 catctctt 46475109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 442
Target Start/End: Original strand, 29953571 - 29953665
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcaccc 442  Q
    ||||||||||||||||||| | ||||||||||||  |||||||| ||  |||||||||  || ||||| ||||||||||||||||||||||||||    
T  29953571 ggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 456 - 528
Target Start/End: Complemental strand, 38321086 - 38321014
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 528  Q
    ||||||| |||| |||||||| ||| ||||||||| |||  |||||||||||||||||||||| |||||||||    
T  38321086 tgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 533
Target Start/End: Complemental strand, 15020408 - 15020282
Alignment:
Q  411 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 503  Q
    |||||||||||||| |||||||||| |||||| ||| | ||||||       ||||||| |||  |||||||||||||||  ||||||||||| ||||||    
T  15020408 tattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatgtgtg--ggtgtaaaaggttgtatg 15020312  T
Q  504 ccacctaagatggttcatgtataagagctc 533  Q
    ||||||| | ||||| |||||||| |||||    
T  15020311 ccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 498
Target Start/End: Original strand, 20086690 - 20086784
Alignment:
Q  411 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggt 498  Q
    |||||||||||||| |||||| |||||||||| |||| |||||||       ||||||| |||  |||| ||||||| |||||||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagggt 20086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 499
Target Start/End: Complemental strand, 29953692 - 29953661
Alignment:
Q  468 gtgtcacaaatgtgtgtgggtgtaaaagggtg 499  Q
    ||||||||||||||||||||||||||||||||    
T  29953692 gtgtcacaaatgtgtgtgggtgtaaaagggtg 29953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 42950036 - 42950111
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattt 424  Q
    ||||||||||||||||||| | ||||| |||||||    ||||||||||||||| |   |||||||||||||||||    
T  42950036 ggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 40561740 - 40561788
Alignment:
Q  39 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttgagt 87  Q
    |||||||| |||| |||||| |||| |||||||||||||| ||||||||    
T  40561740 tatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagt 40561788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 347 - 533
Target Start/End: Complemental strand, 39371121 - 39370927
Alignment:
Q  347 atggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatt 445  Q
    ||||||||||||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||    
T  39371121 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttt 39371022  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||||       |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39371021 ttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 40887941 - 40888133
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||| || ||||   |||||||||||||||||||||||||||| ||||| ||||    
T  40887941 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  40888041 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctc 40888133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 347 - 533
Target Start/End: Complemental strand, 2237470 - 2237276
Alignment:
Q  347 atggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatt 445  Q
    ||||||||||||||||||||| | ||||||||||||  |||||||||||||| | |||||  |||||||| |||||||||||||||||||||||||| ||    
T  2237470 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttt 2237371  T
Q  446 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||||       ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  2237370 ttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 13347320 - 13347128
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | ||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||| ||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctc 13347128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 348 - 533
Target Start/End: Original strand, 1815618 - 1815807
Alignment:
Q  348 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    |||||||||||||||||||| | ||||||||| |  |   |||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  1815618 tggaaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 1815714  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       ||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1815715 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctc 1815807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 349 - 522
Target Start/End: Complemental strand, 14831736 - 14831555
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||| ||| | ||||||||||||  |||||||||||||| | |||||  |||||||| | |||||||||||||||||||||||| ||||    
T  14831736 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatg 522  Q
    ||||||||       ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14831636 catctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 369 - 533
Target Start/End: Original strand, 9408058 - 9408230
Alignment:
Q  369 catttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttt 460  Q
    ||||||||||||||  |||||||||||||| || ||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||    
T  9408058 catttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttt 9408157  T
Q  461 ttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    || |||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  9408158 ttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagagctc 9408230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 352 - 533
Target Start/End: Original strand, 27553376 - 27553564
Alignment:
Q  352 aaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatc 451  Q
    |||| |||| |||||| | ||||||||||||| ||||||||||||| |||| ||  | |||||||||||||||||||||| || ||||||  ||||| ||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttc 27553475  T
Q  452 tctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||       ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  27553476 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctc 27553564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 349 - 496
Target Start/End: Complemental strand, 31800749 - 31800595
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||| ||||| | ||||||||||||| ||| |||||||||||| | ||  ||||||||||||||||||||||||||||||||||| |||||    
T  31800749 ggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttc 31800650  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagg 496  Q
    |||| ||       | ||||| |||||||||| ||||||||||||||||||||||    
T  31800649 atcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaagg 31800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 456 - 535
Target Start/End: Original strand, 33404550 - 33404629
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 535  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  33404550 tgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctcca 33404629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 349 - 455
Target Start/End: Complemental strand, 42683791 - 42683684
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||| |||||| ||||  ||||||||||||||||||||||||||||| || || ||||    
T  42683791 ggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  448 catctctt 455  Q
    ||||||||    
T  42683691 catctctt 42683684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 350 - 533
Target Start/End: Original strand, 4300544 - 4300734
Alignment:
Q  350 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 449  Q
    ||||||||| | |||||||| ||||| ||||| | || ||||||||| ||||| ||  || ||||||| |||||| |||||| |||| ||||  |||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  450 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||       ||||||| |||  |||||||||| ||||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  4300644 tctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctc 4300734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 408 - 533
Target Start/End: Complemental strand, 17225449 - 17225319
Alignment:
Q  408 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 500  Q
    ||||||||||||||||| |||||| |||||||||  ||||||||||||       |||||||  ||| ||||||||||||||||||||||||||  | ||    
T  17225449 gggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--gagt 17225352  T
Q  501 atgccacctaagatggttcatgtataagagctc 533  Q
    |||||||||||  ||||||||||||||||||||    
T  17225351 atgccacctaaagtggttcatgtataagagctc 17225319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 19596067 - 19596258
Alignment:
Q  349 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||| |||||  | | ||| |||||||||||||||||| |   ||||| |||||| |||| |||| | || |||||  |||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcact-atttt 19596165  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    || |||||       ||||||| |||| ||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  19596166 cacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 409 - 529
Target Start/End: Original strand, 19124532 - 19124657
Alignment:
Q  409 ggtattttagtaattttacatcatatcatcacccattttcatctctt------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 502  Q
    ||||||||||||||||||||||||||||||||    |||||||||||      ||||||| ||||  ||||||| ||||||||||||| |||  ||||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttctttaatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtat 19124630  T
Q  503 gccacctaagatggttcatgtataaga 529  Q
    |||| ||||||| || |||||||||||    
T  19124631 gccatctaagatagtccatgtataaga 19124657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 524
Target Start/End: Original strand, 41003915 - 41004031
Alignment:
Q  414 tttagtaattttacatcatatcatcacccattttcatctctttgt------ttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccac 507  Q
    |||||||||||||||||| ||||||| || |||| || ||||| |      |||| |||| ||||| |||||||| || |||||||||||||||||||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttatatctttttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccac 41004014  T
Q  508 ctaagatggttcatgta 524  Q
    ||||  |||||||||||    
T  41004015 ctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 530
Target Start/End: Complemental strand, 12164328 - 12164254
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 530  Q
    ||||||| |||| || ||||| |||||||| || | ||||  ||| |||||||||||||||||||||||||||||    
T  12164328 tgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataagag 12164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 6e-57; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 349 - 535
Target Start/End: Original strand, 34307137 - 34307331
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  34307137 ggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 535  Q
    ||| ||||       ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  34307237 catatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctcca 34307331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 351 - 533
Target Start/End: Original strand, 39249864 - 39250054
Alignment:
Q  351 aaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttca 449  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||| |||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  450 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||       ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 39250054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 349 - 529
Target Start/End: Complemental strand, 2509216 - 2509028
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    |||||||||||||||||||   ||||||||||||| ||||||||||||| ||||||||  || |||||||||||||||||||||||||| ||||| ||||    
T  2509216 ggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    ||||||||       ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  2509116 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 46901734 - 46901926
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 447  Q
    ||||||||||||||||||||| |||||||||||   |||||||||||| ||||||||   | |||||| |||||||||||||||||||||||||| ||||    
T  46901734 ggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  448 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    ||||||||       ||||||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  46901834 catctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 346 - 533
Target Start/End: Original strand, 19258669 - 19258863
Alignment:
Q  346 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 445  Q
    |||| ||||||||||||||||| | ||||| ||||| | || ||||||||||||||| ||  |  ||||||| |||||| |||||| |||| ||||| ||    
T  19258669 tatgaaaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccacccctt 19258768  T
Q  446 ttcatctcttt-------gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||||||||||       |||||| |||| |||||||||| | ||||||||||||| |||||||||||||| |||||||| |||||||| |||||    
T  19258769 ttcatctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctc 19258863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 533
Target Start/End: Complemental strand, 28647544 - 28647353
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 448  Q
    ||||||||||||||||||| | ||||| ||||| | || ||||||| ||||||| ||  |  ||||||| |||||| |||||| |||| ||||| |||||    
T  28647544 ggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttc 28647445  T
Q  449 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 533  Q
    |||| ||       ||||||| |||  | |||||||| ||||||||||||||| | ||||||| |||| || |||||||||||||| |||||    
T  28647444 atctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 528
Target Start/End: Complemental strand, 10147043 - 10146971
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 528  Q
    ||||||| |||| |||||||| |||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  10147043 tgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 1514444 - 1514401
Alignment:
Q  41 tgtttgaataccttcatgcaaaaatgagttgaacaataaatttg 84  Q
    |||||| |||| |||||| |||||||||||||||||||||||||    
T  1514444 tgtttggatacattcatgtaaaaatgagttgaacaataaatttg 1514401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 27500374 - 27500340
Alignment:
Q  53 ttcatgcaaaaatgagttgaacaataaatttgagt 87  Q
    |||||| ||||||||||||||||||||||||||||    
T  27500374 ttcatgtaaaaatgagttgaacaataaatttgagt 27500340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 29099893 - 29099821
Alignment:
Q  456 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    |||||||  ||| ||||||||||||||||||  || |||| |||||||||| ||||| ||||| ||||||||||    
T  29099893 tgtttttgtcacatgtcacaaatgtgtgtggacgt-aaagagtgtatgccatctaaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 346 - 529
Target Start/End: Complemental strand, 6913 - 6722
Alignment:
Q  346 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccat 444  Q
    |||||||||||||||||||| | | ||||||||||||  ||||||||||||| ||||||||  || ||||| |||||||||||||||||||||||||| |    
T  6913 tatggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctt 6814  T
Q  445 tttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    |||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6813 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

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Target: scaffold0043 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 349 - 529
Target Start/End: Original strand, 87162 - 87350
Alignment:
Q  349 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatat--catcacccattt 446  Q
    ||||||||||||||||||| | |||||||||||||  ||||||||||||||||| ||  ||||||||||||||||||| || ||||  ||||||   |||    
T  87162 ggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttt 87261  T
Q  447 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 529  Q
    |||||||||       ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  87262 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 506
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  468 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 506  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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