View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_38 (Length: 245)
Name: NF1093_low_38
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 47710954 - 47711112
Alignment:
| Q |
1 |
actgtttcagtcaattttggttccacatgaaaatgaaagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaa--gtgaatattc |
98 |
Q |
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| T |
47710954 |
actgtttcagtcaattttggttccatatgaaaatgaaagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaagtgtgaatattc |
47711053 |
T |
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| Q |
99 |
ccattattgaagatgtaggagtgcataactatgcaaag----agtagtttagtttctga |
153 |
Q |
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| T |
47711054 |
ccattattgaagatgtaggagtgcataactatgcaaagatgtagtagtttagtttctga |
47711112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 45772769 - 45772852
Alignment:
| Q |
1 |
actgtttcagtcaattttggttccacatgaaaatgaaagagctccttgatcttcttctgatttcaataatgctcttatggtgga |
84 |
Q |
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| T |
45772769 |
actgtttcaaccaattttggttccatacgaaaatgaaagagttccttggtcttcttctgatttccataatgctgttatggtgga |
45772852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 43306091 - 43305943
Alignment:
| Q |
5 |
tttcagtcaattttggttccacatgaaaatgaaagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaagtgaatattcccatta |
104 |
Q |
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| T |
43306091 |
tttcaatcaattttggttccatatgaaaatgaaagagctccttggtcttcttctgatttcaataatgctgttatggtggagaaagtgaatactcccatta |
43305992 |
T |
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| Q |
105 |
ttgaagatgtaggagtgcataactatgcaaagagtagtttagtttctga |
153 |
Q |
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| T |
43305991 |
tagaagatgtaggaatgcataaccatgcaaagagtagtttagtttctga |
43305943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 41828345 - 41828264
Alignment:
| Q |
3 |
tgtttcagtcaattttggttccacatgaaaatgaaagagctccttgatcttcttctgatttcaataatgctcttatggtgga |
84 |
Q |
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| T |
41828345 |
tgtttcaaccaattttggttccatacaaaaatgaaagagctccttggtcttcttctgatttccataatgttgttatggtgga |
41828264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32606610 - 32606547
Alignment:
| Q |
1 |
actgtttcagtcaattttggttccacatgaaaatgaaagagctccttgatcttcttctgatttc |
64 |
Q |
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||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
32606610 |
actgtttcaatcaattttggttccatacgaaaatgaaagagctccttgatcttcttctgatttc |
32606547 |
T |
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