View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_39 (Length: 224)
Name: NF1093_low_39
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_39 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 18093494 - 18093682
Alignment:
| Q |
13 |
ataatataacctttt-ttagtggcatagtataaaaattggatacagtcttactgttttaaagaccaaattaaatattaattcaaaattctataatctaaa |
111 |
Q |
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| T |
18093494 |
ataatataacctttttttagtggcatagtatgaaaattggatatagtcttacaattttaaagaccaaattaaatattaattcaaaattctataatctaaa |
18093593 |
T |
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| Q |
112 |
ctttgtactaaataattttcgtatgtataccagaacatatttgttgcaggaacagacacaacaacatacacactagaatgggcaatggc |
200 |
Q |
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| T |
18093594 |
ctttgtactaaataattttggtatgtataccagaacatatttgttgcaggaacagacacaacaacatacactctagaatgggcaatggc |
18093682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 18103607 - 18103690
Alignment:
| Q |
117 |
tactaaataattttcgtatgtataccagaacatatttgttgcaggaacagacacaacaacatacacactagaatgggcaatggc |
200 |
Q |
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| T |
18103607 |
tactaaataattttggtatgtataccagaacatatttgttgcaggaacagacacaataacatacacactagaatgggcaatggc |
18103690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 8085 - 8137
Alignment:
| Q |
148 |
atatttgttgcaggaacagacacaacaacatacacactagaatgggcaatggc |
200 |
Q |
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| T |
8085 |
atatttgttgccggaacagatacaacaacatcaacattagaatgggcaatggc |
8137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 11106834 - 11106782
Alignment:
| Q |
148 |
atatttgttgcaggaacagacacaacaacatacacactagaatgggcaatggc |
200 |
Q |
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| T |
11106834 |
atatttgttgccggaacagatacaacaacatcaacattagaatgggcaatggc |
11106782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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