View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1093_low_4 (Length: 551)
Name: NF1093_low_4
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 1790438 - 1790978
Alignment:
| Q |
1 |
gcagtaccaactaatgcaatattagagataaaacttgagttaatttcttggaagaccgttattgaagtaactgaggacaagatggttctcaaaaagatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1790438 |
gcagtaccaactaatgcaatattagagataaaacttgagttaatttcttggaagaccgttattgaagtaactgaggacaagatggttctcaaaaagatta |
1790537 |
T |
|
| Q |
101 |
tgaaggaaggtgaaggatacaaacgtccaaaagatggagctgatgcaaaatgtaaattaccattgataatggctcttttcttttgcgtgtattgtaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1790538 |
tgaaggaaggtgaaggatacaaacgtccaaaagatggagctgatgcaaaatgtaaattaccattgataatggctcttttcttttgcgtgtattgtaatgt |
1790637 |
T |
|
| Q |
201 |
atttagtagatagatttctgatgattttcttcattttgcatatttgcagggaaattgacttgtaagcttaaagatggcactgtgttttttcgcaagggcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1790638 |
atttagtagatagatttctgatgattttcttcattttgcatatttgcagggaaattgacttgtaagcttaaagatggcactgtgttttttcgcaagggcc |
1790737 |
T |
|
| Q |
301 |
atggcggagatgaagcagagctgtttgaattcacaacagacgaaggtgagggtgattatcttaaattgttgcattggttcactctctcctattaatttgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1790738 |
atggcggagatgaagcagagctgtttgaattcacaacagacgaaggtgagggtgattatcttaaattgttgcattggttcactctctcctattaatttgt |
1790837 |
T |
|
| Q |
401 |
ttttatactaaccaacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1790838 |
ttttatactaaccaacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggta |
1790937 |
T |
|
| Q |
501 |
gcatcgttgactattgcacctaagtatggttttggttcatc |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1790938 |
gcatcgttgactattgcacctaagtatggttttggttcatc |
1790978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 3495739 - 3495197
Alignment:
| Q |
1 |
gcagtaccaactaatgcaatattagagataaaacttgagttaatttcttggaagaccgttattgaagtaactgaggacaagatggttctcaaaaagatta |
100 |
Q |
| |
|
||||| ||| ||||||||| ||| ||||| | ||||||||| ||||||||||||| ||| ||||||||||| ||||||| |||| ||||||||||| |
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|
| T |
3495739 |
gcagttccacctaatgcaacattggagattacccttgagttagtttcttggaagactgtttccgaagtaactgatgacaagaaggttatcaaaaagattg |
3495640 |
T |
|
| Q |
101 |
tgaaggaaggtgaaggatacaaacgtccaaaagatggagctgatgcaaaatgtaaattaccattgat---aatg---gctcttttcttttgcgtgtattg |
194 |
Q |
| |
|
| |||||||| |||||||| | |||||||| |||||||||| || ||||||||||| | |||||| |||| ||||||||||||| || ||| |
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|
| T |
3495639 |
tcaaggaaggagaaggatatgagcgtccaaatgatggagctgttgtaaaatgtaaatcatgattgatgctaatgaaggctcttttcttttcattgcattt |
3495540 |
T |
|
| Q |
195 |
taatgtatttagtagatagatttctgatg--attttcttcattttgcatatttgcagggaaattgacttgtaagcttaaagatggcactgtgttttttcg |
292 |
Q |
| |
|
||||| ||||||| || |||||||||| ||| || ||||||||||| ||||||| |||| | | | ||||| | ||||||||||||| ||||| |
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|
| T |
3495539 |
taatggatttagtgcatggatttctgatattattatcctcattttgcatctttgcagtgaaactaattggtaagttgcaagatggcactgtctttttgaa |
3495440 |
T |
|
| Q |
293 |
caagggccatggcggagatgaagcagagctgtttgaattcacaacagacgaaggtgagggtgattatcttaaattgttgcattggttc--actctctcct |
390 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| | | | |||| ||| || || || |||||| |
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|
| T |
3495439 |
gaagggccatggcgatgatgaagcagagctgtttgaattcacaacagacga------gggtaatttttt--atttgtggcaatgttttttaccctctccc |
3495348 |
T |
|
| Q |
391 |
attaatttgtttttatactaaccaacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaa |
490 |
Q |
| |
|
|| || || ||||| ||| ||| ||| |||||||||| |||||| |||||||| |||||||| | ||||| |||||||||||||||| |||||||| |
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|
| T |
3495347 |
ataaaattttttttgtaccaactgacggaagtgaatgtttgttgtattgagcagagcaagtgattgatgggctcgatagagctgtaatgaccatgaagaa |
3495248 |
T |
|
| Q |
491 |
gggtgaggtagcatcgttgactattgcacctaagtatggttttggttcatc |
541 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
3495247 |
gggtgaggtagcattgttgactattgcacccgagtatgcttttggttcatc |
3495197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 14389312 - 14389155
Alignment:
| Q |
1 |
gcagtaccaactaatgcaatattagagataaaacttgagttaatttcttggaagaccgttattgaagtaactgaggacaagatggttctcaaaaagatta |
100 |
Q |
| |
|
||||| ||| ||||||||| ||| |||| || |||||||| ||||||||||||| ||| |||||||||| || ||||||| |||| ||||||||||| |
|
|
| T |
14389312 |
gcagttccacctaatgcaacattgaagattaaccttgagttggtttcttggaagactgtttttgaagtaaccgatgacaagaaggttatcaaaaagattc |
14389213 |
T |
|
| Q |
101 |
tgaaggaaggtgaaggatacaaacgtccaaaagatggagctgatgcaaaatgtaaatt |
158 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
14389212 |
tcaaggaaggcgaaggatacaagtgtccaaaagatggagctgctgtaaaatgtaaatt |
14389155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 419 - 542
Target Start/End: Complemental strand, 14388913 - 14388790
Alignment:
| Q |
419 |
aagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgca |
518 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||| | ||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
14388913 |
aagtgaatgtttgttgtattgagcagagcaagtgattgatgggctcgataaagctgtaatgaccatgaagaagggtgaggtagcattgttgactattgca |
14388814 |
T |
|
| Q |
519 |
cctaagtatggttttggttcatct |
542 |
Q |
| |
|
|| |||||| ||||||||||||| |
|
|
| T |
14388813 |
cccgagtatgcttttggttcatct |
14388790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 413 - 541
Target Start/End: Original strand, 2794945 - 2795073
Alignment:
| Q |
413 |
caacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgact |
512 |
Q |
| |
|
|||| |||||||||| | |||| |||||||| |||||||| | |||||||||| ||||||| ||| |||||||||||||||||||| | ||||||| |
|
|
| T |
2794945 |
caactaaagtgaatgctttttgtattgagcagagcaagtgattgatgggcttgataaagctgtactgaccatgaagaagggtgaggtagctttgttgact |
2795044 |
T |
|
| Q |
513 |
attgcacctaagtatggttttggttcatc |
541 |
Q |
| |
|
||| ||||| | |||| |||||||||||| |
|
|
| T |
2795045 |
attacacctgaatatgcttttggttcatc |
2795073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 413 - 541
Target Start/End: Complemental strand, 2876771 - 2876643
Alignment:
| Q |
413 |
caacgaaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgact |
512 |
Q |
| |
|
|||| |||||||||| | |||| |||||||| |||||||| | |||||||||||||||||| ||| |||||||||| ||||||||| | ||||||| |
|
|
| T |
2876771 |
caactaaagtgaatgctttttgtattgagcagagcaagtgattgatgggcttgatagagctgtactgaccatgaagaaggatgaggtagctttgttgact |
2876672 |
T |
|
| Q |
513 |
attgcacctaagtatggttttggttcatc |
541 |
Q |
| |
|
||||| ||| | |||| |||||||||||| |
|
|
| T |
2876671 |
attgcgcctgaatatgcttttggttcatc |
2876643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 418 - 541
Target Start/End: Complemental strand, 2891214 - 2891091
Alignment:
| Q |
418 |
aaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgc |
517 |
Q |
| |
|
|||||||||| | |||| |||||||| |||||||| | |||||||||| ||||||| ||| |||||||||||||||||||| | |||||||||| | |
|
|
| T |
2891214 |
aaagtgaatgctttttgtattgagcagagcaagtgattgatgggcttgataaagctgtactgaccatgaagaagggtgaggtagctttgttgactattac |
2891115 |
T |
|
| Q |
518 |
acctaagtatggttttggttcatc |
541 |
Q |
| |
|
||| | |||| |||||||||||| |
|
|
| T |
2891114 |
gcctgaatatgcttttggttcatc |
2891091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 3500431 - 3500374
Alignment:
| Q |
458 |
agggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactatt |
515 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
3500431 |
agggcttgatagagctgtaatgaccatgaagaagggtgaggtagcgttgttgactatt |
3500374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 541
Target Start/End: Original strand, 3144049 - 3144172
Alignment:
| Q |
418 |
aaagtgaatgtctgttgtgttgagcagcgcaagtgactagagggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgc |
517 |
Q |
| |
|
|||||||||| | |||| |||||||| |||||||| | |||||||||| ||||||| ||| |||||||| ||||||||||| | |||||||||| | |
|
|
| T |
3144049 |
aaagtgaatgctttttgtattgagcagagcaagtgattgatgggcttgataaagctgtactgaccatgaagaaaggtgaggtagctttgttgactattac |
3144148 |
T |
|
| Q |
518 |
acctaagtatggttttggttcatc |
541 |
Q |
| |
|
||| | |||| |||||||||||| |
|
|
| T |
3144149 |
gcctgaatatgcttttggttcatc |
3144172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 541
Target Start/End: Original strand, 3158642 - 3158722
Alignment:
| Q |
461 |
gcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgcacctaagtatggttttggttcatc |
541 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||||||||||||| | |||||||||||| || | |||| |||||||||||| |
|
|
| T |
3158642 |
gcttaatatagctgtaatgaccatgaagaagggtgaggtagctttgttgactattgcgccacaatatgcttttggttcatc |
3158722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 18847812 - 18847754
Alignment:
| Q |
459 |
gggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgc |
517 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
18847812 |
gggcttgataaagctgtattgactatgaagaagggtgaggtagcattattgattattgc |
18847754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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