View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1093_low_9 (Length: 480)
Name: NF1093_low_9
Description: NF1093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1093_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 40565898 - 40565513
Alignment:
| Q |
1 |
aaacacggttttgtctaacatttattataatgtaactttagtttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaat |
100 |
Q |
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| T |
40565898 |
aaacacggttttgtctaacatttattataatgtaactttagtttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaat |
40565799 |
T |
|
| Q |
101 |
aggtcagaactcagaatgcacacctgtgttagcaaaatgaaattaattaaacattatcaaaagctagcatgcttagagacattgcaatt---actatata |
197 |
Q |
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| T |
40565798 |
aggtcagaactcagaatgcacacctgtgttagcaaaatgaaattaattaaacattatcaaaagctagcatgcttagagacattgcaattactactatata |
40565699 |
T |
|
| Q |
198 |
gtcatgtttatataatatgtccagtcaaaaatattgttatatattctgtttttgtcaaaaaccatgtttgtatattatgtataaaaaagaaaccgttgag |
297 |
Q |
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| T |
40565698 |
gtcatgtttatataatatgtccagtcaaaaatattgttatatattctgtttttgtcaaaaaccatgtttgtatattatgtataaaaaagaaaccgttgag |
40565599 |
T |
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| Q |
298 |
tagttgtgattctaaacgtga---atttgtacacatatttatattataaatggtctaatccttttgatcgatcatgataatgttatatat |
384 |
Q |
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| T |
40565598 |
tagttatgattctaaacgtgaattatttgtatacatatttatattataaatggtctaatcctttt----gatcatgataatgttatatat |
40565513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 40570584 - 40570490
Alignment:
| Q |
12 |
tgtctaacatttattataatgtaactttagtttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaataggtca |
106 |
Q |
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| T |
40570584 |
tgtctaatatttattttaatgtaactttagtttttggcaacagtgattgcaacgtttctaactagttgtttaagatttaaaggtagaacaggtca |
40570490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 40570336 - 40570283
Alignment:
| Q |
206 |
tatataatatgtccagtcaaaaatattg-ttatatattctgtttttgtcaaaaa |
258 |
Q |
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| T |
40570336 |
tatatattatttccagtcaaaaatattgtttatatattatgtttctgtcaaaaa |
40570283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 8490271 - 8490224
Alignment:
| Q |
20 |
atttattataatgtaactttagtttttggtaacagtgattgcaatgtc |
67 |
Q |
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| T |
8490271 |
atttattataatgtaactttagtttttggcaacagtgattgcaatgtc |
8490224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 8490077 - 8490036
Alignment:
| Q |
194 |
tatagtcatgtttatataatatgtccagtcaaaaatattgtt |
235 |
Q |
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| T |
8490077 |
tatagtcatgtttatatattatgtccagtcaaaaatattgtt |
8490036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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