View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10940_high_2 (Length: 531)

Name: NF10940_high_2
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10940_high_2
NF10940_high_2
[»] chr6 (7 HSPs)
chr6 (1-514)||(6723914-6724436)
chr6 (350-451)||(17533274-17533381)
chr6 (350-413)||(1929155-1929217)
chr6 (444-514)||(212003-212073)
chr6 (423-514)||(26545988-26546078)
chr6 (54-127)||(22000498-22000570)
chr6 (414-454)||(211943-211983)
[»] chr1 (8 HSPs)
chr1 (350-514)||(31183608-31183775)
chr1 (353-514)||(29488403-29488569)
chr1 (384-514)||(2136949-2137083)
chr1 (350-455)||(22790945-22791053)
chr1 (459-514)||(51273207-51273262)
chr1 (413-455)||(50709686-50709728)
chr1 (459-495)||(50461121-50461157)
chr1 (384-451)||(16123013-16123084)
[»] chr3 (15 HSPs)
chr3 (350-514)||(47014509-47014676)
chr3 (350-514)||(21853847-21854013)
chr3 (413-514)||(31489382-31489483)
chr3 (413-514)||(50387342-50387442)
chr3 (351-481)||(24121239-24121372)
chr3 (413-455)||(43471932-43471974)
chr3 (350-414)||(16343146-16343210)
chr3 (434-514)||(24611339-24611419)
chr3 (384-455)||(1341547-1341622)
chr3 (2-127)||(37983473-37983597)
chr3 (350-514)||(21842698-21842863)
chr3 (460-499)||(8913646-8913685)
chr3 (2-113)||(17688232-17688342)
chr3 (350-413)||(36172019-36172081)
chr3 (350-415)||(35433483-35433547)
[»] chr2 (11 HSPs)
chr2 (353-514)||(36925694-36925856)
chr2 (350-514)||(3353275-3353439)
chr2 (350-514)||(26352752-26352920)
chr2 (424-514)||(45388907-45388997)
chr2 (414-514)||(44986550-44986650)
chr2 (436-514)||(36525847-36525925)
chr2 (350-413)||(14749544-14749606)
chr2 (350-408)||(45389019-45389076)
chr2 (417-501)||(11457986-11458070)
chr2 (350-414)||(43344689-43344752)
chr2 (463-504)||(18858639-18858680)
[»] chr8 (10 HSPs)
chr8 (350-513)||(37231938-37232104)
chr8 (343-514)||(14180230-14180402)
chr8 (413-514)||(2813633-2813734)
chr8 (384-489)||(9136558-9136667)
chr8 (413-501)||(31431248-31431336)
chr8 (350-481)||(39297500-39297637)
chr8 (386-481)||(22470724-22470822)
chr8 (459-513)||(11558840-11558894)
chr8 (417-454)||(32579149-32579186)
chr8 (384-501)||(12006871-12006992)
[»] chr7 (7 HSPs)
chr7 (354-504)||(44797994-44798148)
chr7 (354-514)||(31396988-31397151)
chr7 (414-514)||(47277902-47278002)
chr7 (350-455)||(48138659-48138767)
chr7 (423-513)||(22201263-22201353)
chr7 (423-513)||(22236468-22236558)
chr7 (353-413)||(9229429-9229488)
[»] chr4 (9 HSPs)
chr4 (423-504)||(44746582-44746663)
chr4 (350-455)||(10632247-10632355)
chr4 (346-514)||(21619718-21619888)
chr4 (431-501)||(4775964-4776034)
chr4 (415-501)||(35823460-35823546)
chr4 (413-514)||(43770428-43770528)
chr4 (350-413)||(47724673-47724735)
chr4 (439-504)||(34733923-34733988)
chr4 (392-454)||(38947679-38947745)
[»] scaffold0001 (1 HSPs)
scaffold0001 (413-514)||(394324-394425)
[»] chr5 (8 HSPs)
chr5 (350-503)||(7732390-7732545)
chr5 (414-504)||(12848318-12848408)
chr5 (444-514)||(41634540-41634610)
chr5 (426-500)||(39329596-39329670)
chr5 (423-513)||(8802687-8802777)
chr5 (354-454)||(41634663-41634766)
chr5 (413-489)||(36906776-36906852)
chr5 (423-455)||(39700891-39700923)
[»] scaffold0051 (1 HSPs)
scaffold0051 (350-415)||(53789-53854)


Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 6723914 - 6724436
Alignment:
Q  1 gttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagttgggattggttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6723914 gttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagttgg-attggttcc 6724012  T
Q  101 tcatgtgcaactttagttttcttttcaattaagaaatgataaccatgtaatctactttgtgaatagcaaaaatgtagaaatttatttatgtataggacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724013 tcatgtgcaactttagttttcttttcaattaagaaatgataaccatgtaatctactttgtgaatagcaaaaatgtagaaatttatttatgtataggacat 6724112  T
Q  201 atcatattctagagacaatcacaactgtttttagggacatttctcttctttttatggacaatcaagttaaaaagacatgttggcataatttcacatgttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724113 atcatattctagagacaatcacaactgtttttagggacatttctcttctttttatggacaatcaagttaaaaagacatgttggcataatttcacatgttg 6724212  T
Q  301 gcatttgtgaggtgaaatactt-ggnnnnnnnnggcatcgatgaccctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcg 399  Q
    ||||||||||||||||||||||            |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||     
T  6724213 gcatttgtgaggtgaaatacttcaaaaaaaaaaagcatcgatgatcctttaatactatataatcataaaagccatcatttacagaaaaataatacatgca 6724312  T
Q  400 atcaaaatataaaaaagttt---------ttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaat 490  Q
    ||||||||||||||||   |         |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  6724313 atcaaaatataaaaaaaaataaaaaaaaattatataaattatattctattttcattcgtatgttatagtatcagcaaatgcatcaataaaagaactcaat 6724412  T
Q  491 acaaagtttgtttactattgattg 514  Q
    |||||||||||||| |||| ||||    
T  6724413 acaaagtttgtttattatttattg 6724436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 451
Target Start/End: Original strand, 17533274 - 17533381
Alignment:
Q  350 aatactatataattataaaagtcatcatttac--agaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttc 443  Q
    ||||||||||| | ||||||||||  |||||   | |||||||||||||| |||||||||| ||||    |||||||  |||||||||||||||||||||    
T  17533274 aatactatatattcataaaagtcacaatttaataaaaaaaataatacatgtgatcaaaataaaaaatataaagttttcgtataaatcatattctattttc 17533373  T
Q  444 attcatat 451  Q
    ||||||||    
T  17533374 attcatat 17533381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 413
Target Start/End: Complemental strand, 1929217 - 1929155
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 413  Q
    |||||||||||||||||||||||   ||||||| ||||||||||||||  ||||||||||||||    
T  1929217 aatactatataattataaaagtcgcaatttaca-aaaaataatacatgtaatcaaaatataaaa 1929155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 212003 - 212073
Alignment:
Q  444 attcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||| ||||| | ||||||||||  |||||||||||||||| || |||||||||||||| | |||||||    
T  212003 attcatctgttagaatatcaacaaacacatcaataaaagaactaaaaacaaagtttgtttaatgttgattg 212073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 514
Target Start/End: Original strand, 26545988 - 26546078
Alignment:
Q  423 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    ||||||||||||| | |||||| ||||||||||   |||||||| |  ||||| ||||||||||||| ||||| ||||||||  ||||||||    
T  26545988 tataaatcatattatgttttcaatcatatgttaggatatcaacagaaacatca-taaaagaactcaagacaaattttgtttaaaattgattg 26546078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 22000570 - 22000498
Alignment:
Q  54 acatttgaagatggaagtaagcttatggtgtagttgggattggttcctcatgtgcaactttagttttcttttca 127  Q
    |||| |||| ||||||||||||||||||    ||| ||||||||||||||||||||||||  | ||||||||||    
T  22000570 acatgtgaatatggaagtaagcttatggcaatgtt-ggattggttcctcatgtgcaacttcggatttcttttca 22000498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 211943 - 211983
Alignment:
Q  414 aagtttttatataaatcatattctattttcattcatatgtt 454  Q
    |||||||  ||||||||||||| ||||||||||||||||||    
T  211943 aagttttcgtataaatcatattttattttcattcatatgtt 211983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 350 - 514
Target Start/End: Complemental strand, 31183775 - 31183608
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 445  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||  ||||||||| ||||    ||||||| |||||||||||||||||||||| |    
T  31183775 aatactatataatcataaaagtcaccatttaca-aaaaataatacatgtaatcaaaataaaaaatgtaaagttttcatataaatcatattctattttctt 31183677  T
Q  446 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    ||||||||||   |||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||    
T  31183676 tcatatgttaggatatcaacaaatgtatcaatagaagaactcaaaacaaagtttgtttaatattgattg 31183608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 353 - 514
Target Start/End: Complemental strand, 29488569 - 29488403
Alignment:
Q  353 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattca 448  Q
    |||||| ||| ||||||||||  ||||| | ||||||||| |||| |||||||||| ||||    |||||||  ||||||||||||| ||||||||||||    
T  29488569 actataaaatgataaaagtcacgatttaga-aaaaataatgcatgtgatcaaaataaaaaatataaagttttcgtataaatcatattttattttcattca 29488471  T
Q  449 tatgttatagtatcaacaaatgcatcaat--aaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||||   |||||||||||||||||||  |||||||||||| |||||||||||||| | |||||||    
T  29488470 tatgttaagatatcaacaaatgcatcaattaaaaagaactcaaaacaaagtttgtttaatgttgattg 29488403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 384 - 514
Target Start/End: Complemental strand, 2137083 - 2136949
Alignment:
Q  384 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 479  Q
    |||||||||||||| |||||||| | ||||    |||||||  || ||||||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  2137083 aaaaataatacatgtgatcaaaacaaaaaatctaaagttttcgtagaaatcatattctattttcattcatatgttaggatatcaacaaatgcattaataa 2136984  T
Q  480 aagaactcaatacaaagtttgtttactattgattg 514  Q
    ||||| |||| ||||||||| |||| | |||||||    
T  2136983 aagaattcaaaacaaagtttatttaatgttgattg 2136949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 350 - 455
Target Start/End: Original strand, 22790945 - 22791053
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 445  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||||| ||||    |||||||  ||||||||||||| |||||||||    
T  22790945 aatactatataatcataaaagtcacaatttaca-aaaaataatacatgtgatcaaaataaaaaacttaaagttttcgtataaatcatattttattttcat 22791043  T
Q  446 tcatatgtta 455  Q
    ||||||||||    
T  22791044 tcatatgtta 22791053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 51273262 - 51273207
Alignment:
Q  459 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||| |||||||||    
T  51273262 tatcaacaactgcatcaataaaagaactcaaaacaaaatttgtttaatattgattg 51273207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 455
Target Start/End: Complemental strand, 50709728 - 50709686
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgtta 455  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  50709728 aaagttttcatataaatcatattctattttcattcatatgtta 50709686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 50461121 - 50461157
Alignment:
Q  459 tatcaacaaatgcatcaataaaagaactcaatacaaa 495  Q
    ||||||||||||||||||||||||||||||| |||||    
T  50461121 tatcaacaaatgcatcaataaaagaactcaaaacaaa 50461157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 16123084 - 16123013
Alignment:
Q  384 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatat 451  Q
    ||||||||||||| ||||||||||| ||||    |||||||  |||||| |||||| |||||||||||||||    
T  16123084 aaaaataatacattcgatcaaaataaaaaatgtaaagttttcttataaaccatattatattttcattcatat 16123013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 350 - 514
Target Start/End: Complemental strand, 47014676 - 47014509
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 445  Q
    ||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||| ||||    ||| |||   ||||||||||||| ||||||||    
T  47014676 aatactatataatcataaaagttataatttaca-aaaaataatacatgcgatcaaaataaaaaatgtaaagatttcgcataaatcatattcgattttcat 47014578  T
Q  446 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    ||||||||||   |||||||||||||||||||||||||||| || |||||||| ||||| | |||||||    
T  47014577 tcatatgttaggatatcaacaaatgcatcaataaaagaactaaaaacaaagttcgtttaatgttgattg 47014509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 514
Target Start/End: Complemental strand, 21854013 - 21853847
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 445  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||||  |||||||||| |||     ||||  |  |||||||||||||||||||||||    
T  21854013 aatactatataatcataaaagtcacgatttacagaaaa-taatacatatgatcaaaataaaaattgtgaagtgatc-tataaatcatattctattttcat 21853916  T
Q  446 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    ||||||||||   ||||||||||||||||||||||||||||| | ||||| ||| |||| | |||||||    
T  21853915 tcatatgttaggatatcaacaaatgcatcaataaaagaactctaaacaaattttatttaatgttgattg 21853847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 413 - 514
Target Start/End: Original strand, 31489382 - 31489483
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 512  Q
    ||||||||  ||||||||||||| |||||||||||||||||||   ||||| ||||||||||||||||||||||||| ||||| |||||||| | |||||    
T  31489382 aaagttttcgtataaatcatattttattttcattcatatgttaagatatcagcaaatgcatcaataaaagaactcaaaacaaaatttgtttaatgttgat 31489481  T
Q  513 tg 514  Q
    ||    
T  31489482 tg 31489483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 413 - 514
Target Start/End: Complemental strand, 50387442 - 50387342
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 512  Q
    ||||||||  |||||||||||||||||||||||| |||||||| | ||| ||||||| |||||||||| |||||| | | |||||||||||| | |||||    
T  50387442 aaagttttcgtataaatcatattctattttcatttatatgttagaatattaacaaatacatcaataaaggaactc-agataaagtttgtttaatgttgat 50387344  T
Q  513 tg 514  Q
    ||    
T  50387343 tg 50387342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 481
Target Start/End: Complemental strand, 24121372 - 24121239
Alignment:
Q  351 atactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcatt 446  Q
    |||||||||||| ||||||||||  ||||||  |||||||||| |||  ||||||||||||||    || ||||   ||||| ||||||||||||| |||    
T  24121372 atactatataatcataaaagtcacaatttacc-aaaaataatatatgttatcaaaatataaaatataaaattttcgaataaaacatattctatttttatt 24121274  T
Q  447 catatgttatagtatcaacaaatgcatcaataaaa 481  Q
    ||||| |||  | ||||||||||||||||||||||    
T  24121273 catatattagggaatcaacaaatgcatcaataaaa 24121239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 455
Target Start/End: Complemental strand, 43471974 - 43471932
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgtta 455  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  43471974 aaagttttcatataaatcatattctattttcattcatatgtta 43471932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 16343210 - 16343146
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaa 414  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| |||||    
T  16343210 aatactatataatcataaaagtcgcaatttacaaaaaaataatacatgtgatcaaaataaaaaaa 16343146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 514
Target Start/End: Original strand, 24611339 - 24611419
Alignment:
Q  434 ttctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    ||||||||| |||||||| ||| |  |||||||||||| ||||||||||||||||| |  ||||||||||| | |||||||    
T  24611339 ttctatttttattcatatattagaaaatcaacaaatgcttcaataaaagaactcaaaatcaagtttgtttaatgttgattg 24611419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 1341547 - 1341622
Alignment:
Q  384 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgtta 455  Q
    |||||||||||| | |||||||||| ||||    ||||||| ||||||| |||||| |||||||||||||||||||    
T  1341547 aaaaataatacacgtgatcaaaataaaaaatgtaaagttttcatataaaacatattttattttcattcatatgtta 1341622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 37983473 - 37983597
Alignment:
Q  2 ttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagttgggattggttcct 101  Q
    |||||||||||| ||| |||||||||| ||| || ||| | | |  ||| | |||| |||| ||||||||||||||||||    ||| ||||||||||||    
T  37983473 ttggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt-ggattggttcct 37983571  T
Q  102 catgtgcaactttagttttcttttca 127  Q
    ||||||||||||  | ||||||||||    
T  37983572 catgtgcaacttcggatttcttttca 37983597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 514
Target Start/End: Complemental strand, 21842863 - 21842698
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 445  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||||||| ||     ||||| |   || |||| ||||| |||||||||    
T  21842863 aatactatataatcataaaagtcacgatttac-gaaaaataatacatg--atcaaaataaaagttgtaaagtctacgtaaaaattatattttattttcat 21842767  T
Q  446 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    ||||| |||    ||||||||||| ||||||||||| ||||  | ||||||||| |||| | |||||||    
T  21842766 tcataagtttggatatcaacaaatacatcaataaaaaaactataaacaaagtttatttaatgttgattg 21842698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 499
Target Start/End: Complemental strand, 8913685 - 8913646
Alignment:
Q  460 atcaacaaatgcatcaataaaagaactcaatacaaagttt 499  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  8913685 atcaacaaatgcatcaataaaaaaactcaaaacaaagttt 8913646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 17688232 - 17688342
Alignment:
Q  2 ttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagttgggattggttcct 101  Q
    |||||||||||| ||| |||||||||| ||| || ||| | | |  ||| | |||| |||| ||||||||||||||||||    ||| ||||||||||||    
T  17688232 ttggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt-ggattggttcct 17688330  T
Q  102 catgtgcaactt 113  Q
    ||||||||||||    
T  17688331 catgtgcaactt 17688342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 36172019 - 36172081
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 413  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  36172019 aatactatataatcataaaagtcgcaatttaca-aaaaataatacatgtgatcaaaataaaaaa 36172081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 35433547 - 35433483
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaa 415  Q
    ||||||||||||| |||||| ||   ||||||| |||||||||||||| |||||||||| ||||||    
T  35433547 aatactatataatcataaaaatcgcgatttaca-aaaaataatacatgtgatcaaaataaaaaaaa 35433483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 353 - 514
Target Start/End: Complemental strand, 36925856 - 36925694
Alignment:
Q  353 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa---aaagtttttatataaatcatattctattttcattcat 449  Q
    |||||||||  ||||||||||  ||||||| |||||||||||||| |||||||||| |||   ||||||||  || |||||||||||||||||||||||     
T  36925856 actatataaccataaaagtcacaatttaca-aaaaataatacatgtgatcaaaataaaaatgtaaagttttcgtaaaaatcatattctattttcattcac 36925758  T
Q  450 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||    
T  36925757 atgttaga-tatcaacaaatacatcaataaaagaactcaaaacaaagtttgtttaatgttgattg 36925694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 514
Target Start/End: Complemental strand, 3353439 - 3353275
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa---aagtttttatataaatcatattctattttcatt 446  Q
    ||||||||||||| |||||||||   ||||||| |||||||| |||||  ||||||||| ||     |||||||  |||||||||||| | |||||||||    
T  3353439 aatactatataatcataaaagtcccaatttaca-aaaaataacacatg--atcaaaataaaattgtgaagttttcgtataaatcatatccaattttcatt 3353343  T
Q  447 catatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||||||   |||||||||||| || ||||||||||||||| |||||||||||||| | |||||||    
T  3353342 catatgttaggatatcaacaaatgtatgaataaaagaactcaaaacaaagtttgtttaatgttgattg 3353275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 350 - 514
Target Start/End: Complemental strand, 26352920 - 26352752
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 445  Q
    ||||||||| ||| ||||||||||| ||||||| |||||||||||| |||||||||||| ||||    |||||||  ||||||||||||| |||||||||    
T  26352920 aatactataaaatcataaaagtcataatttaca-aaaaataatacaagcgatcaaaataaaaaatgtaaagttttcgtataaatcatattttattttcat 26352822  T
Q  446 tcat-atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||| ||||||   |||||||||||  |||  ||||||||||||| || | |||| |||| | |||||||    
T  26352821 tcataatgttaggatatcaacaaatttatcggtaaaagaactcaaaactacgtttatttaatgttgattg 26352752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 45388997 - 45388907
Alignment:
Q  424 ataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||||||||| |||||||||||||||||||   ||| |||||||||||||||||||||||| || ||||||| |||||| | |||||||    
T  45388997 ataaatcatattatattttcattcatatgttaggatattaacaaatgcatcaataaaagaacttaaaacaaagtatgtttaatgttgattg 45388907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 414 - 514
Target Start/End: Complemental strand, 44986650 - 44986550
Alignment:
Q  414 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 513  Q
    |||||||  ||||||||||||| |||||||| | |||| |||   ||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||    
T  44986650 aagttttagtataaatcatattatattttcacttatatattaagatatcaacaaatgcatcaataaaagaacccaaaacaaagtttgtttaatgttgatt 44986551  T
Q  514 g 514  Q
    |    
T  44986550 g 44986550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 436 - 514
Target Start/End: Original strand, 36525847 - 36525925
Alignment:
Q  436 ctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||||||||||||| |||     ||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||    
T  36525847 ctattttcattcatatattaggacgtcaacaaatgcatcaataaaaaaactcaaaacaaaatttgtttaatattgattg 36525925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 413
Target Start/End: Complemental strand, 14749606 - 14749544
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 413  Q
    ||||||||||||| ||||||||| | ||||||| |||||||||||||| |||||||||| ||||    
T  14749606 aatactatataatcataaaagtcgtgatttaca-aaaaataatacatgtgatcaaaataaaaaa 14749544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 45389076 - 45389019
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaata 408  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||||||    
T  45389076 aatactatataatcataaaagtcacaatttaca-aaaaataatacatgtgatcaaaata 45389019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 501
Target Start/End: Complemental strand, 11458070 - 11457986
Alignment:
Q  417 tttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgt 501  Q
    |||| |||||||| ||||| ||||||||||||||| ||||  |||||||| | |||||| ||||| ||| ||| ||||| |||||    
T  11458070 ttttcatataaataatattatattttcattcatatattatgatatcaacataagcatcattaaaataacgcaacacaaattttgt 11457986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 43344689 - 43344752
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaa 414  Q
    ||||||||||||| ||||||||||  ||| ||| |||||||||||||| |||||||||| |||||    
T  43344689 aatactatataatcataaaagtcacaattcaca-aaaaataatacatgtgatcaaaataaaaaaa 43344752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 504
Target Start/End: Complemental strand, 18858680 - 18858639
Alignment:
Q  463 aacaaatgcatcaataaaagaactcaatacaaagtttgttta 504  Q
    |||||||||||||||||||||| | || ||||||||||||||    
T  18858680 aacaaatgcatcaataaaagaatttaaaacaaagtttgttta 18858639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 350 - 513
Target Start/End: Complemental strand, 37232104 - 37231938
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 445  Q
    ||||||||||||  ||||||||||  ||||||| |||||||||| ||| ||||||| || ||||    || ||||  |||||||||||||||||||||||    
T  37232104 aatactatataagcataaaagtcacaatttaca-aaaaataatatatgtgatcaaagtaaaaaatgtaaatttttcgtataaatcatattctattttcat 37232006  T
Q  446 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 513  Q
    | ||||||||   ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  37232005 ttatatgttaggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgatt 37231938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 343 - 514
Target Start/End: Complemental strand, 14180402 - 14180230
Alignment:
Q  343 accctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattcta 438  Q
    |||||| |||||||| |||| ||||||||||  ||||||| ||||||||| |||| |||||||||| || |    || ||||  ||||||||||||||||    
T  14180402 acccttcaatactatttaatcataaaagtcacaatttaca-aaaaataatgcatgtgatcaaaataaaatatgtaaatttttcgtataaatcatattcta 14180304  T
Q  439 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||||||||| ||||   ||||||||||||||||||||||||||||||  |||||||||||||| | |||||||    
T  14180303 ttttcattcataagttaggatatcaacaaatgcatcaataaaagaactca--acaaagtttgtttaatgttgattg 14180230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 413 - 514
Target Start/End: Original strand, 2813633 - 2813734
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 512  Q
    ||||||||| |||||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||| |||||||||||||| | |||||    
T  2813633 aaagtttttgtataaatcatattctattttcattcatatgttaggatatcaacaaatatatcaataaaagaactcaaaacaaagtttgtttaatgttgat 2813732  T
Q  513 tg 514  Q
    ||    
T  2813733 tg 2813734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 384 - 489
Target Start/End: Original strand, 9136558 - 9136667
Alignment:
Q  384 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 479  Q
    ||||| |||||||| |||||||||| ||||    || ||||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  9136558 aaaaaaaatacatgtgatcaaaataaaaaatgtaaaattttcgtataaatcatattctattttcattcatatgttatgatatcaacaaatgcatcaataa 9136657  T
Q  480 aagaactcaa 489  Q
     |||| ||||    
T  9136658 gagaattcaa 9136667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 501
Target Start/End: Original strand, 31431248 - 31431336
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgt 501  Q
    |||||||| |||||||||||||| |||||||||||||||||||   |||| ||| |  ||||| ||||||||||||| ||||| |||||    
T  31431248 aaagttttcatataaatcatattatattttcattcatatgttaagatatccacagaaacatcattaaaagaactcaacacaaattttgt 31431336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 481
Target Start/End: Original strand, 39297500 - 39297637
Alignment:
Q  350 aatactatataattataaaagtcatcatttacag--aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttc 443  Q
    ||||||||||||| ||||||||||  |||||||   |||||||||||||  |||||||||| ||||    |||||||| || | || ||||| |||||||    
T  39297500 aatactatataatcataaaagtcacaatttacaacaaaaaataatacatatgatcaaaataaaaaatttaaagtttttgtaaacattatattttattttc 39297599  T
Q  444 attcatatgttatagtatcaacaaatgcatcaataaaa 481  Q
    ||| |||| |||   |||||||||||| ||||||||||    
T  39297600 atttatatattaggatatcaacaaatgtatcaataaaa 39297637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 22470822 - 22470724
Alignment:
Q  386 aaataatacatgcgatcaaaatataaa---aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaa 481  Q
    |||||||||||| |||||||||| |||   ||||||||  ||||||||||||||||| ||||||  |||||||   ||||||||||  ||||| |||||    
T  22470822 aaataatacatgtgatcaaaataaaaatataaagttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa 22470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 11558894 - 11558840
Alignment:
Q  459 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 513  Q
    |||||||||||||| ||||||||||| |||| ||||| |||||||| | ||||||    
T  11558894 tatcaacaaatgcaacaataaaagaaatcaaaacaaaatttgtttaatgttgatt 11558840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 454
Target Start/End: Complemental strand, 32579186 - 32579149
Alignment:
Q  417 tttttatataaatcatattctattttcattcatatgtt 454  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  32579186 tttttttataaatcatattctattttctttcatatgtt 32579149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 501
Target Start/End: Complemental strand, 12006992 - 12006871
Alignment:
Q  384 aaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 479  Q
    |||||||||||||| |||||||||| |||    ||||||||  ||||||  ||||| |||||| |||||||||||    |||||| ||| |||| | |||    
T  12006992 aaaaataatacatgtgatcaaaataaaaaatgtaaagttttcttataaactatattatatttttattcatatgttgggatatcaagaaaagcataattaa 12006893  T
Q  480 aagaactcaatacaaagtttgt 501  Q
    |||||||| | ||||| |||||    
T  12006892 aagaactctacacaaattttgt 12006871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 354 - 504
Target Start/End: Original strand, 44797994 - 44798148
Alignment:
Q  354 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcattcat 449  Q
    ||||||||| ||||||||||  ||||||| ||||| |||||||| |||||||||| |||    ||||||||  ||||||||||||| |||||||||||||    
T  44797994 ctatataatcataaaagtcacaatttacaaaaaaaaaatacatgtgatcaaaataaaaattgtaaagttttcgtataaatcatattatattttcattcat 44798093  T
Q  450 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgttta 504  Q
    ||||||   ||||||||||||  ||||||||||||||||| ||||||||| ||||    
T  44798094 atgttaggatatcaacaaatgtttcaataaaagaactcaaaacaaagtttattta 44798148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 354 - 514
Target Start/End: Original strand, 31396988 - 31397151
Alignment:
Q  354 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcat 449  Q
    ||||||||| ||||||||||  ||||||| |||| |||||| || |||||||||| ||||    || |||| |||||||||||||| |||||| ||| ||    
T  31396988 ctatataatcataaaagtcacaatttaca-aaaagtaatacttgtgatcaaaataaaaaatataaaattttcatataaatcatattttatttttatttat 31397086  T
Q  450 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||    ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  31397087 atgttgggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattg 31397151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 414 - 514
Target Start/End: Complemental strand, 47278002 - 47277902
Alignment:
Q  414 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 513  Q
    |||||||| ||||||| || ||||||||||| |||||| |||   ||||||||||||| |||||||||||| |||| |||||||||| ||| | ||||||    
T  47278002 aagtttttgtataaataattttctattttcactcatatattaggatatcaacaaatgcttcaataaaagaattcaaaacaaagtttgattaatgttgatt 47277903  T
Q  514 g 514  Q
    |    
T  47277902 g 47277902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 455
Target Start/End: Complemental strand, 48138767 - 48138659
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 445  Q
    ||||||||||||| |||||| |||  ||||||| |||||||||| ||| |||||||||| ||||    |||||||  ||||||||||||| ||||||| |    
T  48138767 aatactatataatcataaaattcacaatttaca-aaaaataatatatgtgatcaaaataaaaaatgtaaagttttcgtataaatcatattatattttcgt 48138669  T
Q  446 tcatatgtta 455  Q
    ||||||||||    
T  48138668 tcatatgtta 48138659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 22201353 - 22201263
Alignment:
Q  423 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 513  Q
    ||||||||||||| ||||||||||||||  ||| | ||||| || | | |||| ||||| | ||||| ||||| ||||| |||||||||||    
T  22201353 tataaatcatattatattttcattcatacattagaatatcagcagaagtatcattaaaatagctcaacacaaattttgtctactattgatt 22201263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 22236468 - 22236558
Alignment:
Q  423 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 513  Q
    ||||||||||||| ||||||||||||||  ||| | ||||| || | | |||| ||||| | ||||| ||||| ||||| |||||||||||    
T  22236468 tataaatcatattatattttcattcatacattagaatatcagcagaagtatcattaaaatagctcaacacaaattttgtctactattgatt 22236558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 9229429 - 9229488
Alignment:
Q  353 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 413  Q
    |||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  9229429 actatataatcataaaagtcgcgatttaca-aaaaataatacatgtgatcaaaataaaaaa 9229488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 423 - 504
Target Start/End: Complemental strand, 44746663 - 44746582
Alignment:
Q  423 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgttta 504  Q
    ||||||||||||| ||||||||||||||| |||   ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  44746663 tataaatcatattttattttcattcatatcttaggatatcaacaaatgcatcaataaaaaaactcaaaacaaagtttgttta 44746582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 455
Target Start/End: Complemental strand, 10632355 - 10632247
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 445  Q
    |||| |||||||| ||||| ||||  ||||||| |||||||||||||| |||||||||  |||    ||||||||  ||||||||||||| |||||||||    
T  10632355 aatattatataatcataaatgtcacaatttaca-aaaaataatacatgtgatcaaaattaaaaatgtaaagttttcgtataaatcatattttattttcat 10632257  T
Q  446 tcatatgtta 455  Q
    ||||||||||    
T  10632256 tcatatgtta 10632247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 514
Target Start/End: Complemental strand, 21619888 - 21619718
Alignment:
Q  346 ctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa---aagtttttatataaatcatattctatttt 442  Q
    ||||| ||||||| ||| ||||||||||  ||  ||| |||||||||||||| |||||||||||||||   ||  ||||   |||| || ||||||||||    
T  21619888 ctttattactatacaatcataaaagtcacaatcgacaaaaaaataatacatgtgatcaaaatataaaatataaaatttt-cgtaaaacacattctatttt 21619790  T
Q  443 cattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
     ||||||||||||   ||| ||||  ||||||||||||| |||||||   |||||||||||| | |||||||    
T  21619789 tattcatatgttaggatattaacacgtgcatcaataaaataactcaaataaaagtttgtttaatgttgattg 21619718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Complemental strand, 4776034 - 4775964
Alignment:
Q  431 atattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgt 501  Q
    ||||| ||||||||| ||||||||||| |||||||| | |||||| | ||||||||||| ||||| |||||    
T  4776034 atattatattttcatccatatgttataatatcaacataagcatcattgaaagaactcaacacaaattttgt 4775964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 35823460 - 35823546
Alignment:
Q  415 agtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgt 501  Q
    ||||||| ||||||||||||| |||||||||||||||||||   |||||| | | |  ||| ||||||||||||| ||||| |||||    
T  35823460 agtttttttataaatcatattttattttcattcatatgttaggatatcaatagaagtgtcattaaaagaactcaacacaaattttgt 35823546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 514
Target Start/End: Original strand, 43770428 - 43770528
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 512  Q
    ||||||||  |||||||||||||||||| |  |||||| ||||   ||||||||||| ||| ||||||| ||||||| || ||||||||||| | |||||    
T  43770428 aaagttttcgtataaatcatattctattatatttcatacgttaggatatcaacaaattcattaataaaataactcaaaac-aagtttgtttaatgttgat 43770526  T
Q  513 tg 514  Q
    ||    
T  43770527 tg 43770528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 47724673 - 47724735
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 413  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  47724673 aatactatataatcataaaagtcgcaatttaca-aaaaataatacatgtgatcaaaataaaaaa 47724735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 34733988 - 34733923
Alignment:
Q  439 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgttta 504  Q
    |||||||||||||||||   |||||| ||||||||||||||||  ||| || ||||| ||||||||    
T  34733988 ttttcattcatatgttaggatatcaataaatgcatcaataaaaacacttaaaacaaattttgttta 34733923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 38947679 - 38947745
Alignment:
Q  392 tacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgtt 454  Q
    |||||| |||||||||||||||    || ||||  ||||||| ||||||||||||||||||||||||    
T  38947679 tacatgtgatcaaaatataaaatataaaattttcgtataaattatattctattttcattcatatgtt 38947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 514
Target Start/End: Complemental strand, 394425 - 394324
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 512  Q
    ||||||||  |||||||| |||| |||||| |||| |||||||| ||||||||||||| ||||||| |||||||||| ||||| |||||||| | |||||    
T  394425 aaagttttcgtataaatcgtattatattttaattcttatgttatggtatcaacaaatggatcaatacaagaactcaaaacaaaatttgtttaatgttgat 394326  T
Q  513 tg 514  Q
    ||    
T  394325 tg 394324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 503
Target Start/End: Complemental strand, 7732545 - 7732390
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaagt-----ttttatataaatcatattctattttca 444  Q
    ||||||||||||| ||||||||||  ||||| | ||||||||||  || | |||||||| ||||| ||     |||| ||||||||||  | ||||||||    
T  7732545 aatactatataatcataaaagtcacaatttata-aaaaataatatgtgtggtcaaaataaaaaaatgtaaattttttgtataaatcat--tatattttca 7732449  T
Q  445 ttcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgttt 503  Q
    ||||||||||| | |||||| ||||||||||||||||||||| || || ||||||||||    
T  7732448 ttcatatgttagaatatcaataaatgcatcaataaaagaacttaaaacgaagtttgttt 7732390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 504
Target Start/End: Original strand, 12848318 - 12848408
Alignment:
Q  414 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgttta 504  Q
    |||||||  ||||||| |||||||||||| |||||||| |||    |||||||||| |||||||||| |||||||| ||||||||||||||    
T  12848318 aagttttcgtataaattatattctatttttattcatatattaggacatcaacaaatacatcaataaaggaactcaaaacaaagtttgttta 12848408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 444 - 514
Target Start/End: Complemental strand, 41634610 - 41634540
Alignment:
Q  444 attcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 514  Q
    |||||||||||| | |||||||||||||||||||||||||||| || | |||||||||||| | |||||||    
T  41634610 attcatatgttagaatatcaacaaatgcatcaataaaagaactaaaaataaagtttgtttaatgttgattg 41634540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 500
Target Start/End: Complemental strand, 39329670 - 39329596
Alignment:
Q  426 aaatcatattctattttcattcatatgttatag-tatcaacaaatgcatcaataaaagaactcaatacaaagtttg 500  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||||| ||||||||| |||| ||||||||||    
T  39329670 aaattatattctattttcattcatatatt-tagatatcaacaaatgcatcgataaaagaattcaaaacaaagtttg 39329596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 8802687 - 8802777
Alignment:
Q  423 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 513  Q
    ||||||||||||| |||||| ||||||||||||   |||||| | | ||||||  |||||||||||| ||||| |||||||| ||||||||    
T  8802687 tataaatcatattatatttttattcatatgttaggatatcaatagaagcatcatcaaaagaactcaacacaaattttgtttaatattgatt 8802777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 454
Target Start/End: Complemental strand, 41634766 - 41634663
Alignment:
Q  354 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcat 449  Q
    ||||||||| ||||||||||| ||||| | || || |||||||| |||||||| | ||||    | |||||  |||||||||||||||||||||||||||    
T  41634766 ctatataatcataaaagtcataatttaaaaaagaa-aatacatgtgatcaaaacaaaaaatgtaatgttttcgtataaatcatattctattttcattcat 41634668  T
Q  450 atgtt 454  Q
    |||||    
T  41634667 atgtt 41634663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 489
Target Start/End: Complemental strand, 36906852 - 36906776
Alignment:
Q  413 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaa 489  Q
    |||||||| ||||||| |||||| ||||||||||||| |||||   ||||||||||  ||| | |||||||||||||    
T  36906852 aaagttttcatataaagcatattatattttcattcatttgttaggatatcaacaaaaacattattaaaagaactcaa 36906776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 455
Target Start/End: Original strand, 39700891 - 39700923
Alignment:
Q  423 tataaatcatattctattttcattcatatgtta 455  Q
    |||||||||||||||||||||||||||||||||    
T  39700891 tataaatcatattctattttcattcatatgtta 39700923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 53854 - 53789
Alignment:
Q  350 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaa 415  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||||    
T  53854 aatactatataatcataaaagtcgcaatttacaaaaaaataatacatgtgatcaaaataaaaaaaa 53789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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