View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_high_6 (Length: 407)
Name: NF10940_high_6
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 55171262 - 55171643
Alignment:
| Q |
16 |
aattctccgttcttagatccccaagaattgacattggcaggactgttctctgtaatgtaactgcagattgtatctctgtcaacaatcattatctctattt |
115 |
Q |
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| T |
55171262 |
aattctccgttcttagatccccaagaattgacattggcaggactgttctctgtaatgtaactgcagattgtatctctgtcaacaatcattatctctattt |
55171361 |
T |
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| Q |
116 |
tttctggacttcccttctcctcttccaatacaacaagcaaattgtcctttgcattcaggtaatctcttgggatgtggtactctgtttgactaggttgtcc |
215 |
Q |
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| T |
55171362 |
tttctggacttcccttctcctcttctaatacaacaagcaaattgtcctttgcattcaggtaatctcttgggatgtggtactcttcttgactaggttgtcc |
55171461 |
T |
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| Q |
216 |
aagaggggagaggaatgacatccagtgacgaccgatgctttttccgttcacccaaatcattccttttcccataccagtcatcctgatggcaactggacct |
315 |
Q |
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| T |
55171462 |
aagaggggagaggaatgacatccagtgacgaccgatgctttttccgttcacccaaatcattccttttcccataccagtcatcctgatggcaactggacct |
55171561 |
T |
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| Q |
316 |
cttccctctggtgtggcaaatcttgtcttcaaccaggagagagcacgtgtttctcctgtgactggatcccattgaaccttct |
397 |
Q |
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| T |
55171562 |
cttccctctggtgtggcaaatcttgtcttcaaccaggagagtgcacgtgtttctcctgtgactggatcccattgaaccttct |
55171643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 27724384 - 27724266
Alignment:
| Q |
193 |
tactctgtttgactaggttgtccaagaggggagaggaatgacatccagtgacgaccgatgctttttccgttcacccaaatcattccttttcccataccag |
292 |
Q |
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||||||| |||| |||| | ||||||||| |||||| | ||||||||||||||| ||||||| || || |||||||||||||||||| ||||||| |
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| T |
27724384 |
tactctgattgagtaggctttccaagaggagagaggtagctcatccagtgacgaccaatgctttcaccattaacccaaatcattccttttgccatacctt |
27724285 |
T |
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| Q |
293 |
tcatcctgatggcaactgg |
311 |
Q |
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||| | |||||||||||| |
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| T |
27724284 |
ccattccgatggcaactgg |
27724266 |
T |
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