View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_high_8 (Length: 363)
Name: NF10940_high_8
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 2892193 - 2892556
Alignment:
| Q |
1 |
tagaagagaggtccaataagtcaagtctaggagtatgtgttactggatcaattcccattctcaaaagccttttcctaatgtgtgtgttccaatagttttt |
100 |
Q |
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| T |
2892193 |
tagaagagaggtccaataagtcaagtctaggagtatgtgttactggatcaattcccattctcaaaagccttttcctaatgtgtgtgttccaatagttttt |
2892292 |
T |
|
| Q |
101 |
tatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccacctataata-----ataaagtcgattgagtatgaacgaaagattca----aa |
191 |
Q |
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| T |
2892293 |
tatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccacctataatataatgatagagtcgattgagtatcaacgaaagattcaaattaa |
2892392 |
T |
|
| Q |
192 |
taaaataagttgaccaaactct----------atatatatactttacttacttgttgccaagaatgctatgtagctgaataattgtctcttcctcttcaa |
281 |
Q |
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| T |
2892393 |
taaaataagttgatcaaactctacgtacgtacacatagatactttacttacttgttgccaagaatgctatgtagctgaataattgtctcttcctcttcaa |
2892492 |
T |
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| Q |
282 |
atgaaaaccgaccacgttttatatctggtcggagatagtttgtccaacggagacgacaactttt |
345 |
Q |
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| T |
2892493 |
atgaaaaccgaccacgttttatatctggtcggagatagtttgtccaacggagacgacaactttt |
2892556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 37881310 - 37881397
Alignment:
| Q |
69 |
cttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccacctataat |
156 |
Q |
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| T |
37881310 |
cttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggtaatctagcagctatagcagaccacctataat |
37881397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 36246631 - 36246513
Alignment:
| Q |
34 |
tatgtgttactggatcaattcccattctcaaaagccttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgaga |
133 |
Q |
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| T |
36246631 |
tatgtgtcacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggtagcctaga |
36246532 |
T |
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| Q |
134 |
tgcaattgcagaccaccta |
152 |
Q |
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||||||| |||||||||| |
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| T |
36246531 |
agcaattgaagaccaccta |
36246513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 36246355 - 36246242
Alignment:
| Q |
229 |
ttacttgttgccaagaatgctatgtagctgaataattgtctcttcctcttcaaatgaaaaccgaccacgttttatatctggtcggagatagtttgtccaa |
328 |
Q |
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||||||||||||||| |||||||| |||||||| || || ||||| |||||||| || || || || | |||||||| ||||||||||||||||||||| |
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| T |
36246355 |
ttacttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggtcggagatagtttgtccaa |
36246256 |
T |
|
| Q |
329 |
cggagacgacaact |
342 |
Q |
| |
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|| ||||||||||| |
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| T |
36246255 |
cgtagacgacaact |
36246242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 50777504 - 50777543
Alignment:
| Q |
88 |
tccaatagttttttatttcattgtccgtccttcctggtaa |
127 |
Q |
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| T |
50777504 |
tccaataattttttatttcattgtccgttcttcctggtaa |
50777543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 53557767 - 53557723
Alignment:
| Q |
83 |
tgtgttccaatagttttttatttcattgtccgtccttcctggtaa |
127 |
Q |
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| T |
53557767 |
tgtgttccaatagttttttatgtcattgtctgttcttccaggtaa |
53557723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 38707243 - 38707205
Alignment:
| Q |
88 |
tccaatagttttttatttcattgtccgtccttcctggta |
126 |
Q |
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| T |
38707243 |
tccaatagttttttatttcattgtccgttctacctggta |
38707205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 9622133 - 9622085
Alignment:
| Q |
81 |
tgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatc |
129 |
Q |
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||||||||||| ||||| |||||||||||||| || | ||||||||||| |
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| T |
9622133 |
tgtgtgttccagtagttctttatttcattgtctgttcgtcctggtaatc |
9622085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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