View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10940_low_1 (Length: 571)

Name: NF10940_low_1
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10940_low_1
NF10940_low_1
[»] chr7 (1 HSPs)
chr7 (14-534)||(2041894-2042415)
[»] chr1 (2 HSPs)
chr1 (95-412)||(3117004-3117322)
chr1 (432-500)||(3116904-3116973)
[»] chr3 (5 HSPs)
chr3 (95-267)||(5747061-5747232)
chr3 (95-267)||(5784020-5784191)
chr3 (95-225)||(7816438-7816569)
chr3 (158-226)||(48206081-48206149)
chr3 (275-312)||(7816611-7816648)
[»] chr2 (2 HSPs)
chr2 (112-504)||(31150149-31150544)
chr2 (360-414)||(31138080-31138134)
[»] chr5 (2 HSPs)
chr5 (170-410)||(22977605-22977845)
chr5 (432-506)||(22977878-22977952)
[»] chr8 (1 HSPs)
chr8 (162-221)||(32706243-32706302)
[»] chr6 (1 HSPs)
chr6 (355-411)||(3769785-3769842)


Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Complemental strand, 2042415 - 2041894
Alignment:
Q  14 agacaaaagacaataagaacataaaaaagagttaagggaatcgagaattggatattctaggagatccctaaaatccccatcgaatttcctcatccatcga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2042415 agacaaaagacaataagaacataaaaaagagttaagggaatcgagaattggatattctaggagatccctaaaatccccatcgaatttcctcatccatcga 2042316  T
Q  114 attttttcaaaccataacatccccagtcggagagaatgaacgacaatgcaacactcctaatgctccaaaagagaaacttaatgagtaatgtttgatatga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2042315 attttttcaaaccataacatccccagtcggagagaatgaacgacaatgcaacactcctaatgcttcaaaagagaaacttaatgagtaatgtttgatatga 2042216  T
Q  214 tcacccttgtatcgagtagtgtgtttgatattctgaattttggacttcatcttcattgggtgactcttcgacacatagggtgtgaaacttgtattatcag 313  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||    
T  2042215 tcacccttgtatcgagtagtgtgtttgatattctgaattttgaacttcatcttcattcggtaactctttgacacattgggtgtgaaacttgtattatcag 2042116  T
Q  314 cagcattctcttcggaatttttagagtc-aaaacttactgggtaattgcaagatctttttgagcaacgctacttaaaattggatctgttggtgatacttc 412  Q
    |||||||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2042115 cagcattctctttggaatttctagagtcaaaaacttattgggtaattgcaagatctttttgagcaacgctacttaaaattggatctgttgatgatacttc 2042016  T
Q  413 caacaatgtctttgaaacaatgctcaatatcattagaaacattacaacctgatgctcatgaatgtcattctccgaaccagtgtcatcaacaaccacaaaa 512  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2042015 caacgatgtctttgaaacaatgctcaatatcattagaaacattacaacctgatgctcatgaatgtcattctccgaaccaatgtcatcaacaaccacaaaa 2041916  T
Q  513 tcctaattcttctcaactacta 534  Q
    ||||||||||||||||||||||    
T  2041915 tcctaattcttctcaactacta 2041894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 95 - 412
Target Start/End: Complemental strand, 3117322 - 3117004
Alignment:
Q  95 gaatttcctcatccatcgaattttttcaaaccataacatccccagtcggaga-gaatgaacgacaatgcaacactcctaatgctccaaaagagaaactta 193  Q
    |||||| ||||||| || ||||||  |||||||||||||||| ||||  | | ||| ||| ||||||||||||| ||||||| |||||||||||  |||     
T  3117322 gaattttctcatccgtcaaattttcccaaaccataacatcccgagtcaaacaagaaagaatgacaatgcaacacccctaatgatccaaaagagagccttc 3117223  T
Q  194 atgagtaatgtttgatatgatcacccttgtatcgagtagtgtgtttgatattctgaattttggacttcatcttcattgggtgactcttcgacacataggg 293  Q
    ||||||||| |||||||||||| | |||| | | |||| ||| |||||||||   ||||||||||||||||||| || ||| ||| ||| | ||||| ||    
T  3117222 atgagtaatatttgatatgatctcgcttgca-caagtattgtatttgatatttctaattttggacttcatcttcttttggtaacttttcaaaacataagg 3117124  T
Q  294 tgtgaaacttgtattatcagcagcattctcttc-ggaatttttagagtc-aaaacttactgggtaattgcaagatctttttgagcaacgctacttaaaat 391  Q
    ||| ||||||||||| |   || |||||| ||| ||| ||| ||||||| |||||||  ||  |||||| ||||||||||||||||||||||||||||||    
T  3117123 tgtaaaacttgtattct---caacattctattcaggactttctagagtcaaaaacttcttgaataattgtaagatctttttgagcaacgctacttaaaat 3117027  T
Q  392 tggatctgt--tggtgatacttc 412  Q
    | ||| |||  ||||||||||||    
T  3117026 tagatgtgttatggtgatacttc 3117004  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 500
Target Start/End: Complemental strand, 3116973 - 3116904
Alignment:
Q  432 atgctcaatatcattagaaacatta-caacctgatgctcatgaatgtcattctccgaaccagtgtcatca 500  Q
    |||||||||||||||||| |  ||| |||| ||||||||||| ||||||||||  |||||||||||||||    
T  3116973 atgctcaatatcattagacattttagcaacttgatgctcatgtatgtcattctttgaaccagtgtcatca 3116904  T

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Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 95 - 267
Target Start/End: Original strand, 5747061 - 5747232
Alignment:
Q  95 gaatttcctcatccatcgaattttttcaaaccataacatccccagtcggag-agaatgaacgacaatgcaacactcctaatgctccaaaagagaaactta 193  Q
    |||||| ||||||| |||||||||| ||||||||||||||  ||||||||| ||||  || ||||||||||||| ||||||||||||||||||||||||     
T  5747061 gaattttctcatccgtcgaatttttccaaaccataacatctacagtcggagaagaagaaatgacaatgcaacac-cctaatgctccaaaagagaaacttg 5747159  T
Q  194 atgagtaatgtttgatatgatcacccttgtatcgagtagtgtgtttgatattctgaattttggacttcatcttc 267  Q
    |||||||| | |||||||| |||||||||||||  ||| | | |||||||||   | |||| ||||||||||||    
T  5747160 atgagtaa-ggttgatatgttcacccttgtatcaggtattatatttgatatttctagtttttgacttcatcttc 5747232  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 95 - 267
Target Start/End: Original strand, 5784020 - 5784191
Alignment:
Q  95 gaatttcctcatccatcgaattttttcaaaccataacatccccagtcggag-agaatgaacgacaatgcaacactcctaatgctccaaaagagaaactta 193  Q
    |||||| ||||||| |||||||||| ||||||||||||||  ||||||||| ||||  || ||||||||||||| ||||||||||||||||||||||||     
T  5784020 gaattttctcatccgtcgaatttttccaaaccataacatctacagtcggagaagaagaaatgacaatgcaacac-cctaatgctccaaaagagaaacttg 5784118  T
Q  194 atgagtaatgtttgatatgatcacccttgtatcgagtagtgtgtttgatattctgaattttggacttcatcttc 267  Q
    |||||||| | |||||||| |||||||||||||  ||| | | |||||||||   | |||| ||||||||||||    
T  5784119 atgagtaa-ggttgatatgttcacccttgtatcaggtattatatttgatatttctagtttttgacttcatcttc 5784191  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 7816438 - 7816569
Alignment:
Q  95 gaatttcctcatccatcgaattttttcaaaccataacatccccagtcggaga-gaatgaacgacaatgcaacactcctaatgctccaaaagagaaactta 193  Q
    |||||||||||||| |||||||||  ||||||| | ||||| |||||||||| |||  || ||||||||||||| |||||||||||||||||||||| |     
T  7816438 gaatttcctcatccgtcgaattttcccaaaccaaaccatcctcagtcggagaagaagtaatgacaatgcaacacccctaatgctccaaaagagaaacatc 7816537  T
Q  194 atgagtaatgtttgatatgatcacccttgtat 225  Q
    || |||||||||||||| | ||||||||||||    
T  7816538 attagtaatgtttgatacgttcacccttgtat 7816569  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 48206149 - 48206081
Alignment:
Q  158 aatgcaacactcctaatgctccaaaagagaaacttaatgagtaatgtttgatatgatcacccttgtatc 226  Q
    |||||||||| | |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  48206149 aatgcaacacccttaatactccaaaagagaaacttcatgagtaatgtttgatatgttcacccttgtatc 48206081  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 7816611 - 7816648
Alignment:
Q  275 gactcttcgacacatagggtgtgaaacttgtattatca 312  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  7816611 gactcttcgaaacataaggtgtgaaacttgtattatca 7816648  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 112 - 504
Target Start/End: Complemental strand, 31150544 - 31150149
Alignment:
Q  112 gaattttttcaaaccataacatccccagtcggaga-gaatgaacgacaatgcaacactcctaatgctccaaaagagaaacttaatgagtaatgtttgata 210  Q
    ||||||| |||||||||||||||| | |||||||| ||| ||| |||||||| ||||  |||||| ||||||||| |||||| ||| |||||||||||||    
T  31150544 gaattttctcaaaccataacatcctcggtcggagaagaaggaatgacaatgccacacctctaatggtccaaaagataaacttcatgtgtaatgtttgata 31150445  T
Q  211 tgatcacccttgtatcgagtagtgtgtttgatattctgaattttggacttcatcttcattgggtgactcttcgacacatagggtgtgaaacttgtattat 310  Q
    ||||||||||| || || ||| ||| |||| |||||     |||||||||||||||  |  || |||||||||||       ||||||||||||||||||    
T  31150444 tgatcacccttata-cgggtattgtatttggtattcccttatttggacttcatctttttccggcgactcttcgac-------gtgtgaaacttgtattat 31150353  T
Q  311 cagcagcattctcttcggaatttttagagtcaaaacttac-tgggtaattgcaagatctttttgagcaacgctacttaaaattggatctgttggtgatac 409  Q
        | |||||||||||| |||| || ||||||||   || ||  |||||||||| ||||||| ||||| |||||| ||| ||| || ||||||||||||    
T  31150352 ---taacattctcttcggcatttctaaagtcaaaaaccacttgaataattgcaagttcttttttagcaatgctactcaaagttgaatgtgttggtgatac 31150256  T
Q  410 ttccaacaatgtctttgaaaca-----------atgctcaatatcattagaaacatta-caacctgatgctcatgaatgtcattctccgaaccagtgtca 497  Q
    || || | || ||| |||||||           ||| ||||||||||||||||||||| |||  ||||| ||||| || ||||||||| ||||| ||||     
T  31150255 tttcagcgatttctctgaaacaattttatgttcatgttcaatatcattagaaacattatcaaaatgatgttcatgtatatcattctcctaaccaatgtct 31150156  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 31138080 - 31138134
Alignment:
Q  360 gcaagatctttttgagcaacgctacttaaaattggatctgttggtgatacttcca 414  Q
    |||||| ||||||||| |||||| ||||||||| ||| |||||||||||||||||    
T  31138080 gcaagagctttttgagaaacgctgcttaaaattagatgtgttggtgatacttcca 31138134  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 170 - 410
Target Start/End: Original strand, 22977605 - 22977845
Alignment:
Q  170 ctaatgctccaaaagagaaacttaatgagtaatgtttgatatgatcacccttgtatcgagtagtgtgtttgatattctgaattttggactt----catct 265  Q
    ||||| || ||||||||||||||| |||||||||||||||||| ||||||||  ||| |||| | | ||||||||| | ||||||||||||    |||||    
T  22977605 ctaatactgcaaaagagaaactta-tgagtaatgtttgatatgttcacccttaaatcaagtattatatttgatattttcaattttggacttaattcatct 22977703  T
Q  266 tcattgggtgactcttcgacacatagggtgtgaaacttgtattatcagcagcattctcttcggaatttttagagtcaaaa-cttactgggtaattgcaag 364  Q
    || ||  ||||||||| ||||| || || ||||||||| |||||||| ||   || ||||||| |||| ||||||||||| ||| ||   ||||||||||    
T  22977704 tctttttgtgactctttgacacctaaggagtgaaacttatattatcaaca---ttttcttcggcatttctagagtcaaaaactttctaa-taattgcaag 22977799  T
Q  365 atctttttgagcaacgctacttaaaattggatctgttggtgatact 410  Q
    ||| |||| |||||||||||| |||||||||| || |||| |||||    
T  22977800 atcatttttagcaacgctactcaaaattggatgtgatggttatact 22977845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 22977878 - 22977952
Alignment:
Q  432 atgctcaatatcattagaaacatta-caacctgatgctcatgaatgtcattctccgaaccagtgtcatcaacaacc 506  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| | |||| |||||| |||||||    
T  22977878 atgctcaatatcattagaaacattagcaacgtgatgctcatgcatgtcattctctgcacca-tgtcatgaacaacc 22977952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 32706243 - 32706302
Alignment:
Q  162 caacactcctaatgctccaaaagagaaacttaatgagtaatgtttgatatgatcaccctt 221  Q
    |||||| | ||||| |||||||||||||||| | ||||||||||||||||| ||||||||    
T  32706243 caacacacttaatgttccaaaagagaaacttcaagagtaatgtttgatatgctcaccctt 32706302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 3769785 - 3769842
Alignment:
Q  355 taattgcaagatctttttgagcaacgctact-taaaattggatctgttggtgatactt 411  Q
    ||||| ||||||||| |||||||||||||||  ||||||| || ||||||||||||||    
T  3769785 taatttcaagatcttcttgagcaacgctactgaaaaattgtatgtgttggtgatactt 3769842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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