View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10940_low_10 (Length: 299)
Name: NF10940_low_10
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_10 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 33807942 - 33808213
Alignment:
| Q |
1 |
tcataagagtgtgagagaagaatatagtgagccaattcgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807942 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta |
33808041 |
T |
|
| Q |
101 |
ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgttgtgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
33808042 |
ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt |
33808139 |
T |
|
| Q |
200 |
gtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808140 |
gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33808213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 33811596 - 33811867
Alignment:
| Q |
1 |
tcataagagtgtgagagaagaatatagtgagccaattcgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811596 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta |
33811695 |
T |
|
| Q |
101 |
ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgttgtgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
33811696 |
ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt |
33811793 |
T |
|
| Q |
200 |
gtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811794 |
gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33811867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 33816514 - 33816785
Alignment:
| Q |
1 |
tcataagagtgtgagagaagaatatagtgagccaattcgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816514 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta |
33816613 |
T |
|
| Q |
101 |
ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgttgtgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
33816614 |
ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt |
33816711 |
T |
|
| Q |
200 |
gtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816712 |
gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33816785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 16698620 - 16698670
Alignment:
| Q |
223 |
tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
16698620 |
tgcctattctgagttcacggaggatggaaattatgcatatatttcccaaca |
16698670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
| Q |
96 |
ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggttttt-ccttactcaca-tgagaaggttttccacgctaaaatt |
190 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||| | | ||||||| | ||||| |||| |||||| |||||||| ||||||| |||||||| |
|
|
| T |
16698504 |
ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt |
16698601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 273
Target Start/End: Complemental strand, 31152197 - 31151926
Alignment:
| Q |
4 |
taagagtgtgagagaagaatatagtgagccaattcgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattc |
103 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
31152197 |
taagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgtattc |
31152098 |
T |
|
| Q |
104 |
ccattattattatagtggagatttaagaggcctacgggtcccgtggt-ttttccttactcaca-tgagaaggttttccacgctaaaattttgttgtgtgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
31152097 |
ccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgt |
31151998 |
T |
|
| Q |
202 |
cattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31151997 |
cattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca |
31151926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaag |
172 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||| || ||||||| |||||| |
|
|
| T |
22981504 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
22981603 |
T |
|
| Q |
173 |
gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggca |
263 |
Q |
| |
|
|||||||||||||||||| | ||||| | ||||| ||||||||||| | ||||| ||||||||||||||||| |||||||||||||| || |
|
|
| T |
22981604 |
gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca |
22981700 |
T |
|
| Q |
264 |
tttcccaaca |
273 |
Q |
| |
|
|||||||||| |
|
|
| T |
22981701 |
tttcccaaca |
22981710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 23806904 - 23806698
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaag |
172 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||| || ||||||| |||||| |
|
|
| T |
23806904 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
23806805 |
T |
|
| Q |
173 |
gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggca |
263 |
Q |
| |
|
|||||||||||||||||| | ||||| | ||||| ||||||||||| | ||||| ||||||||||||||||| |||||||||||||| || |
|
|
| T |
23806804 |
gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca |
23806708 |
T |
|
| Q |
264 |
tttcccaaca |
273 |
Q |
| |
|
|||||||||| |
|
|
| T |
23806707 |
tttcccaaca |
23806698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 1111524 - 1111378
Alignment:
| Q |
53 |
tacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattatta-tagtggagatttaagaggcctacgggtcccgtggtt |
151 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||||| ||||||||| ||||||||||| || | ||||||||||| | || | ||||| || || |
|
|
| T |
1111524 |
tacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattattattattatagtagatttaagagacttatgagtcccatgatt |
1111425 |
T |
|
| Q |
152 |
tttccttactcaca-tgagaaggttttccacgctaaaattttgttgt |
197 |
Q |
| |
|
|||||||| | ||| | ||||||||||| || ||||||||||||||| |
|
|
| T |
1111424 |
tttccttatttacattcagaaggttttctacactaaaattttgttgt |
1111378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 50603138 - 50603403
Alignment:
| Q |
11 |
gtgagagaagaatatagtgagccaattcgt--gagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccatt |
108 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
50603138 |
gtgagagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccatt |
50603237 |
T |
|
| Q |
109 |
attattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgttgtgtgtcatttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50603238 |
attattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtcatttt |
50603337 |
T |
|
| Q |
208 |
acgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||||||| |||||| | | |||||||||||||| |
|
|
| T |
50603338 |
acgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttcccaaca |
50603403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 276
Target Start/End: Complemental strand, 44782733 - 44782521
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaa |
171 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | | |||||||||||||||| |||| |||| || ||||| |
|
|
| T |
44782733 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa |
44782634 |
T |
|
| Q |
172 |
ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag |
260 |
Q |
| |
|
||||||||||||||||||| | || ||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44782633 |
ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgctag--tgtctattttgagttcacggaggagggaaattatgcag |
44782537 |
T |
|
| Q |
261 |
gcatttcccaacataa |
276 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44782536 |
gcatttcccaacataa |
44782521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 54967419 - 54967209
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaa |
171 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| | |||||||||||||||||| || |||| || ||||| |
|
|
| T |
54967419 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa |
54967320 |
T |
|
| Q |
172 |
ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag |
260 |
Q |
| |
|
||||||||||||||||||| | || ||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54967319 |
ggttttccacgctaaaattctctt-tgtgtcattacgcttttatttcacgtttccgctag--tgcctattttgagttgacggaggagggaaattatgcag |
54967223 |
T |
|
| Q |
261 |
gcatttcccaacat |
274 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54967222 |
gcatttcccaacat |
54967209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 39298785 - 39298908
Alignment:
| Q |
69 |
tagttaggtccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-t |
166 |
Q |
| |
|
||||||| ||||||| ||||||||| | |||||||||| |||| ||||||||||| |||||||||| | |||||||||| ||||||||| ||||| | |
|
|
| T |
39298785 |
tagttagatccacctaagggtgaagttgttgtattccctttatcattatagtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacatt |
39298884 |
T |
|
| Q |
167 |
gagaaggttttccacgctaaaatt |
190 |
Q |
| |
|
||||||||||| ||| |||||||| |
|
|
| T |
39298885 |
gagaaggtttttcacactaaaatt |
39298908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 261
Target Start/End: Complemental strand, 54980051 - 54979854
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggttttt-ccttactcaca-tgagaa |
171 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| | |||||||||||||||| |||| |||| | |||||| |
|
|
| T |
54980051 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa |
54979952 |
T |
|
| Q |
172 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag |
260 |
Q |
| |
|
||||||||| ||||||||| | || |||||| |||| ||||||||||| | ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
54979951 |
ggttttccatgctaaaattctctt-tgtgtcattacacttttatttcacgtttccgct--agtgcttattttgagttgacggaggagggaaattatgcag |
54979855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 31725417 - 31725346
Alignment:
| Q |
51 |
tctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtgga |
122 |
Q |
| |
|
||||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
31725417 |
tctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttatattgga |
31725346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaag |
172 |
Q |
| |
|
||||||| ||||||||| | |||||||| |||| | ||||||||||| |||||||||| |||||||||||||||| |||| |||| || |||||| |
|
|
| T |
18556511 |
tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag |
18556412 |
T |
|
| Q |
173 |
gttttccacgctaaaatttt |
192 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18556411 |
gttttccacgctaaaatttt |
18556392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 17645933 - 17645981
Alignment:
| Q |
226 |
ctattttgagttcacggaggagggaaattatgcagg-catttcccaaca |
273 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
17645933 |
ctattttgagttcacggatgagggaaattatggaggtcatttcccaaca |
17645981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 31725262 - 31725198
Alignment:
| Q |
209 |
cgtttccgctaaattgcctatttt-gagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
31725262 |
cgtttccgctaaat-gcctatttttgaattcacggagaaggtgaattatgcagacatttcccaaca |
31725198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 17645869 - 17645897
Alignment:
| Q |
166 |
tgagaaggttttccacgctaaaattttgt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17645869 |
tgagaaggttttccacgctaaaattttgt |
17645897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 18556353 - 18556305
Alignment:
| Q |
225 |
cctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||| |||||||||| |
|
|
| T |
18556353 |
cctattttgagttcatggaggaggcaaattatgtaggtgtttcccaaca |
18556305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 59 - 273
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
| Q |
59 |
ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttcctt |
158 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||| ||| | |||||||| || |||||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt |
29706970 |
T |
|
| Q |
159 |
actcaca-tgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatg |
257 |
Q |
| |
|
||||| | |||||||||||||| | ||||||||||||||||||||||||||| ||| |||||| ||| |||||| |||||||||| ||| ||||||||| |
|
|
| T |
29706969 |
actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg |
29706870 |
T |
|
| Q |
258 |
caggcatttcccaaca |
273 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
29706869 |
gaggcattttccaaca |
29706854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
| Q |
99 |
tattcccattattattatagtggagatttaagaggcctacgggtcccgtg-gtttttccttactcaca-tgagaaggttttccacgctaaaatt |
190 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || || |||||| ||||||||| |||||| |||||||||||| ||||| |||||| |
|
|
| T |
27642132 |
tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt |
27642225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 96 - 257
Target Start/End: Complemental strand, 26674 - 26514
Alignment:
| Q |
96 |
ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacat-gagaaggttttccacgctaaaattttgt |
194 |
Q |
| |
|
|||||||| | |||| |||| |||||| ||||||||||| | ||||||||| |||||||||||||||||| || |||||||||||| |||||||||||| |
|
|
| T |
26674 |
ttgtattctcgttatcattagagtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgt |
26575 |
T |
|
| Q |
195 |
tgtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatg |
257 |
Q |
| |
|
||||| ||||||||||| ||||||| || |||||||||||||||| |||||||| |||||| |
|
|
| T |
26574 |
tgtgtt--attttacgttttcgctaaagtgtctattttgagttcacgaaggagggagattatg |
26514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 41481606 - 41481815
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaa |
171 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||| |||| |||| || ||||| |
|
|
| T |
41481606 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaa |
41481705 |
T |
|
| Q |
172 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag |
260 |
Q |
| |
|
||||||||||||||||||| | || |||||| |||| ||||||||||| | || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481706 |
ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcag |
41481802 |
T |
|
| Q |
261 |
gcatttcccaaca |
273 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41481803 |
gcatttcccaaca |
41481815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 275
Target Start/End: Original strand, 36167596 - 36167815
Alignment:
| Q |
68 |
atagttaggtccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactca |
163 |
Q |
| |
|
||||| || ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||| ||||||||| |||| |||| |
|
|
| T |
36167596 |
atagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcc-gtggttttttccctttctca |
36167694 |
T |
|
| Q |
164 |
cat-gagaaggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaattgcctattttgagttcacggaggagggaa |
251 |
Q |
| |
|
|| |||||||||||||||||||||||| | || ||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36167695 |
tattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgctag--tgcctattttgagttcacggaggagggaa |
36167791 |
T |
|
| Q |
252 |
attatgcaggcatttcccaacata |
275 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36167792 |
attatgcaggcatttcccaacata |
36167815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 268
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
| Q |
80 |
acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaaggt |
174 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||| | |||| |||||||||| |||| ||||||| |||||||| |
|
|
| T |
18951326 |
acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt |
18951227 |
T |
|
| Q |
175 |
tttccacgctaaaattttgttgtgtgtc------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcc |
268 |
Q |
| |
|
|||||| ||||||||| ||| | | |||| | |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18951226 |
tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgctag--tgcctattttgagttcacggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 18116930 - 18116885
Alignment:
| Q |
227 |
tattttgagttcacggaggagggaaattatgcaggcatttcccaac |
272 |
Q |
| |
|
|||||| ||||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
18116930 |
tattttaagttcacagacgaggtaaattatgcaggcatttcccaac |
18116885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaa |
171 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||| | |||||| ||||||||| |||| ||||||| ||||| |
|
|
| T |
4842857 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa |
4842758 |
T |
|
| Q |
172 |
ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag |
260 |
Q |
| |
|
||||||||||||||||||| | || ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842757 |
ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgctag--tgcctattttgagttcacggaggagggaaattatgcag |
4842661 |
T |
|
| Q |
261 |
gcatttcccaaca |
273 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4842660 |
gcatttcccaaca |
4842648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 274
Target Start/End: Complemental strand, 25857317 - 25857130
Alignment:
| Q |
96 |
ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcaca-tgagaaggttttccacgctaaaatttt |
192 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
25857317 |
ttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt-- |
25857220 |
T |
|
| Q |
193 |
gttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacat |
274 |
Q |
| |
|
| |||||| |||| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25857219 |
-ctctgtgtcattacgcttatatttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaacat |
25857130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 4835782 - 4835575
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaa |
171 |
Q |
| |
|
||||||| ||||||||| | ||| ||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
4835782 |
tccacctaagggtgaagttgttgcattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa |
4835683 |
T |
|
| Q |
172 |
ggttttccacgctaaaattttgt-tgt------gtgt-cattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggca |
263 |
Q |
| |
|
||||||||||||||||||| | | ||| || | |||| |||||||| || | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4835682 |
ggttttccacgctaaaattctctgtgtcattacgtttatatttcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggca |
4835585 |
T |
|
| Q |
264 |
tttcccaaca |
273 |
Q |
| |
|
|||||||||| |
|
|
| T |
4835584 |
tttcccaaca |
4835575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaag |
172 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||| ||||||||||| || ||||||| |||||| |
|
|
| T |
13465165 |
tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag |
13465066 |
T |
|
| Q |
173 |
gttttccacgctaaaatttt |
192 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13465065 |
gttttccacgctaaaatttt |
13465046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
| Q |
223 |
tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24380113 |
tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca |
24380163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
| Q |
79 |
cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttt |
176 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||||| ||||||||||| ||||||||| | | ||||| ||||||||||||| |||||| || |||||||| |
|
|
| T |
17845847 |
cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt |
17845946 |
T |
|
| Q |
177 |
tccacgctaaaattttgttgtgt |
199 |
Q |
| |
|
||||| |||||||| | |||||| |
|
|
| T |
17845947 |
tccactctaaaattctcttgtgt |
17845969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacat-gagaag |
172 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||| | | ||||||||||||||| || ||||||| |||||| |
|
|
| T |
24379487 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag |
24379388 |
T |
|
| Q |
173 |
gttttccacgctaaaatt |
190 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
24379387 |
gttttccacgttaaaatt |
24379370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
| Q |
96 |
ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacat-gagaaggttttccacgctaaaatt |
190 |
Q |
| |
|
||||||| ||||||| ||| |||| || ||||||||| | |||||||||||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
27341120 |
ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt |
27341025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 8252853 - 8252797
Alignment:
| Q |
14 |
agagaagaatatagtgagccaattcgtgagagttgtatctacaaattgagatacata |
70 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacata |
8252797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 24379329 - 24379279
Alignment:
| Q |
223 |
tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| || ||||| |||||| |
|
|
| T |
24379329 |
tgcctattttaagttcacggaggagagaaattatgtagacattttccaaca |
24379279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 2727 - 2937
Alignment:
| Q |
77 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacat-gagaa |
171 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
2727 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa |
2826 |
T |
|
| Q |
172 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag |
260 |
Q |
| |
|
||||||||||||||||||| | || |||||| |||| ||||||||||| | || ||||||||||||||||||| |||||||||||||| |
|
|
| T |
2827 |
ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat |
2923 |
T |
|
| Q |
261 |
gcatttcccaacat |
274 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2924 |
gcatttcccaacat |
2937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 68 - 273
Target Start/End: Complemental strand, 9757431 - 9757212
Alignment:
| Q |
68 |
atagttaggtccacctgagggtgaagat-ttgtattcccattattattatagtgga---gatttaagaggcctacgggtcccgtggttttt-ccttactc |
162 |
Q |
| |
|
||||| || ||||||| ||||||||| | ||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||| |||| ||| |
|
|
| T |
9757431 |
atagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttttaagaggcccaagggtcccgtggtttttccctttctc |
9757332 |
T |
|
| Q |
163 |
aca-tgagaaggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggaggga |
250 |
Q |
| |
|
||| ||||||||||||||||||||||||| | || |||||| |||| ||||||||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
9757331 |
acattgagaaggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgcctattttgagttcacggaggaagga |
9757235 |
T |
|
| Q |
251 |
aattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
9757234 |
aattatgcaggcatttaccaaca |
9757212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
| Q |
79 |
cacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggtt |
175 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| |||||||||| || ||||||||| | | |||||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
42683038 |
cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt |
42682939 |
T |
|
| Q |
176 |
ttccacgctaaaatt |
190 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42682938 |
ttccacgctgaaatt |
42682924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
| Q |
96 |
ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaatttt |
192 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| || || |||||||||| ||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
37287069 |
ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt |
37286972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 25002947 - 25002905
Alignment:
| Q |
229 |
ttttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
25002947 |
ttttgagttcacggag-agggaaattatgca-gcatttcccaaca |
25002905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 342267 - 342217
Alignment:
| Q |
223 |
tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
273 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
342267 |
tgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca |
342217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 342404 - 342306
Alignment:
| Q |
96 |
ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggttt-ttcc-ttactcaca-tgagaaggttttccacgctaaaatt |
190 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||| | || ||||||||||| |||| || |||| | |||||||||||| |||||||||||| |
|
|
| T |
342404 |
ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaatt |
342306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
| Q |
96 |
ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaa |
188 |
Q |
| |
|
|||||||| |||||| |||||||| | ||||||||||| | |||||||||||||| ||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
37037942 |
ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa |
37038035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 37038076 - 37038112
Alignment:
| Q |
223 |
tgcctattttgagttcacggaggagggaaattatgca |
259 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37038076 |
tgcctattttgagttcacggaggagagaaattatgca |
37038112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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