View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_11 (Length: 296)
Name: NF10940_low_11
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 20596226 - 20595961
Alignment:
| Q |
21 |
caaatgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcttgttttcaggtttcttaaatgtggc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
20596226 |
caaatgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactca--gtcacgcatgttttcaggtttcttaaatgtggc |
20596129 |
T |
|
| Q |
121 |
aaacttaagcttactcccaccattttcctcttcctcttcactttcaggttcactctctaacacatcattgttatactcctcttcctcaactctgactatg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
20596128 |
aaacttaagcttactcccaccattttcctcttcctcttcactttcaggtccactctctaacatatcactgttatactcctcttcctcaactctgactatg |
20596029 |
T |
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| Q |
221 |
ctagattgaccaacagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
288 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20596028 |
ctagattgaccaatagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
20595961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 8697227 - 8696960
Alignment:
| Q |
21 |
caaatgttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcttgttttcaggtttcttaaatgtggc |
120 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
8697227 |
caaatgttctaacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtcacgcatattttcaggtttcttaaatgtggc |
8697128 |
T |
|
| Q |
121 |
aaacttaagcttactcccaccattttcctcttcctcttcactttcaggttcactctctaacacatcattgttatactcctcttcctcaactctgactatg |
220 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8697127 |
aaacttaagcttattcccaccattttcctcttcatcttcactttcagctccactctctaacacatcactgttatactcctcttcctcaactctgactatg |
8697028 |
T |
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| Q |
221 |
ctagattgaccaacagtttggtttgtgttaatttgctcatccactacctcatcatcaaacacaggttc |
288 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
8697027 |
ctagattgaccaacattttggtttgtgttagtttgctcacccactacctcatcatcaaacacaggttc |
8696960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 37104373 - 37104437
Alignment:
| Q |
26 |
gttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtc |
90 |
Q |
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||||| || ||||||||||| | |||||| |||||||||| |||||| ||||||| |||||||| |
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| T |
37104373 |
gttctcaccgcatcttgaaactgcttcttaaacacaaaatatgtccctgcctcccattcatagtc |
37104437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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