View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_13 (Length: 278)
Name: NF10940_low_13
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 27416016 - 27415758
Alignment:
| Q |
8 |
caccattgcactcaacttgaccagacccacaatcacctgtggcacaaataaaatttccgttgttgtttgagcatccgg-ttcgggcccaaaatcgataag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||| |
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| T |
27416016 |
caccattgcactcaacttgaccagacccacaatcacctgtggcacaactaaaatttccgttattgtttgagcatccggtttcgggcccaaaattgataag |
27415917 |
T |
|
| Q |
107 |
ccaatggagaaggaacgtccactgatttcgttgctccttgtcccaactcaaaacctgttgttgatagttaggtg---tttgaatctaagtttaaggttcc |
203 |
Q |
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|||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| || |||||| |||||| ||||||||| |
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| T |
27415916 |
ccaatggataaggaaggtccactgatttcgtttctccttgttccaactcaaaacctgttgttgatagttgaatgtaatttgaacctaagtataaggttcc |
27415817 |
T |
|
| Q |
204 |
tggccatacagtgtatacacatctattcatgaatgtcaccttggctcctccaacctctg |
262 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27415816 |
tggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctg |
27415758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 27410039 - 27410295
Alignment:
| Q |
2 |
cgccaccaccattgcactcaacttgaccagacccacaatcacctgtggcacaaataaaatttccgttgttgtttgagcatccggttcgggcccaaaatcg |
101 |
Q |
| |
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||||| ||||||||||| | |||||||||||||||||||| ||||||||||| |||| ||| | |||||| ||||||||||||||| ||||||||||| |
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| T |
27410039 |
cgccagcaccattgcaccccacttgaccagacccacaatcggctgtggcacaactaaacttttctttgttgattgagcatccggttcttgcccaaaatcg |
27410138 |
T |
|
| Q |
102 |
ataagccaatggagaaggaacgtccactgatttcgttgctccttgtcccaactcaaaacctgttgttgatagtt-aggtgtttgaatctaagtttaaggt |
200 |
Q |
| |
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| || | ||| |||||||| || ||| || | ||| ||||||||||||||||||||||||||||||||| || ||| ||||| | || | ||||| |
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| T |
27410139 |
accagaccatgaagaaggaaggttcaccgagtacgtcactccttgtcccaactcaaaacctgttgttgataattgaggggtttg-agctgtagtaaaggt |
27410237 |
T |
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| Q |
201 |
tcctggccatacagtgtatacacatctattcatgaatgtcaccttggctcctccaacc |
258 |
Q |
| |
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||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
27410238 |
tcctggccatacagtatatccacatctattcgtgaatgtcaccttggctcctccaacc |
27410295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 27389083 - 27389334
Alignment:
| Q |
2 |
cgccaccaccattgcactcaacttgaccagacccacaatcacctgtggcacaaataaaatttccgttgttgtttgagcatccggttcgggcccaaaatcg |
101 |
Q |
| |
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||||| |||||||||| ||||||||||||| ||||||| | ||||||||| |||| | |||||||||| |||||||||||||||||||||||||||| |
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| T |
27389083 |
cgccagcaccattgcatgcaacttgaccagatgcacaatcggcagtggcacaagtaaactgtccgttgttggttgagcatccggttcgggcccaaaatcg |
27389182 |
T |
|
| Q |
102 |
ataagccaatggagaaggaacgtccactgatttcgttgctccttgtcccaactcaaaacctgttgttgatag-ttaggtgtttgaatctaagtttaaggt |
200 |
Q |
| |
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| | | |||| ||||||| ||| |||| ||||||||||| |||| ||||| ||||||||||||||||| | |||| |||| ||| | ||||||| |
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| T |
27389183 |
acctgaccatggggaaggaatttccgctgagttcgttgctccaggtcctaactcgaaacctgttgttgatagctgaggtttttg-gtctccggttaaggt |
27389281 |
T |
|
| Q |
201 |
tcctggccatacagtgtatacacatctattcatgaatgtcaccttggctcctc |
253 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||||| ||| ||||||||| |
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| T |
27389282 |
tcctggccatacggtgtatccacatctattcgtgaatgttaccgtggctcctc |
27389334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 27215160 - 27215416
Alignment:
| Q |
2 |
cgccaccaccattgcactcaacttgaccagacccacaatcacctgtggcacaaataaaatttccgttgttgtttgagcatccggttcgggcccaaaatcg |
101 |
Q |
| |
|
||||| |||||||||| | | ||||||||| ||||||| | |||||||| | || ||||| |||||||| |||||||||||||| |||||||||| |
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| T |
27215160 |
cgccagcaccattgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatcg |
27215259 |
T |
|
| Q |
102 |
ataagccaatggagaaggaacgtccactgatttcgttgctccttgtcccaactcaaaacctgttgttgatagtt-aggtgtttgaatctaagtttaaggt |
200 |
Q |
| |
|
| || | |||| || |||| ||||||||| | || |||| ||||||||| |||||||| |||||||| | |||| |||| ||| | |||| || |
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| T |
27215260 |
accagaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttgg-tctccggttaacgt |
27215358 |
T |
|
| Q |
201 |
tcctggccatacagtgtatacacatctattcatgaatgtcaccttggctcctccaacc |
258 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||| |||||||| |||||||||||| |
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| T |
27215359 |
tcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacc |
27215416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 27443741 - 27443486
Alignment:
| Q |
2 |
cgccaccaccattgcactcaacttgaccagacccacaatcacctgtggcacaaataaaatttccgttgttgtttgagcatccggttcgggcccaaaatcg |
101 |
Q |
| |
|
||||| |||||||||| | | ||||||||| ||||||| | |||||||| | || ||||| |||||||| |||||||||||||| |||||||||| |
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| T |
27443741 |
cgccagcaccattgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatcg |
27443642 |
T |
|
| Q |
102 |
ataagccaatggagaaggaacgtccactgatttcgttgctccttgtcccaactcaaaacctgttgttgatagtt-aggtgtttgaatctaagtttaaggt |
200 |
Q |
| |
|
| || | |||| || |||| ||||||||| | || |||| ||||||||| |||||||| |||||||| | |||| |||| ||| | |||| || |
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| T |
27443641 |
accagaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttgg-tctccggttaacgt |
27443543 |
T |
|
| Q |
201 |
tcctggccatacagtgtatacacatctattcatgaatgtcaccttggctcctccaac |
257 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||| |||||||| ||||||||||| |
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|
| T |
27443542 |
tcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaac |
27443486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 27432889 - 27433125
Alignment:
| Q |
22 |
acttgaccagacccacaatcacctgtggcacaaataaaatttccgttgttgtttgagcatccggttcgggcccaaaatcgataagccaatggagaaggaa |
121 |
Q |
| |
|
||||||||||| ||||||| | ||||||||| | || ||||| |||||||| |||||||||||||| ||||||||||| | | |||| || |||| |
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| T |
27432889 |
acttgaccagaggcacaatcggcggtggcacaactgaactttccattgttgttggagcatccggttcgtccccaaaatcgacccgaccatggtgatggaa |
27432988 |
T |
|
| Q |
122 |
cgtccac-tgatttcgttgctccttgtcccaactcaaaacctgttgttgatagtt-aggtgtttgaatctaagtttaaggttcctggccatacagtgtat |
219 |
Q |
| |
|
|||||| | | || |||||||| |||| ||||||||||| ||||||||||| | ||| |||| ||| |||| ||||| ||||||||||||||| |
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|
| T |
27432989 |
ggtccacctcaatt-gttgctccaggtcctaactcaaaacccgttgttgatagctgaggcttttgg-tctccagttaacgttcccggccatacagtgtat |
27433086 |
T |
|
| Q |
220 |
acacatctattcatgaatgtcaccttggctcctccaacc |
258 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
27433087 |
tcacacctatttgtgaatgtcaccttagctcctccaacc |
27433125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 27221142 - 27221378
Alignment:
| Q |
22 |
acttgaccagacccacaatcacctgtggcacaaataaaatttccgttgttgtttgagcatccggttcgggcccaaaatcgataagccaatggagaaggaa |
121 |
Q |
| |
|
||||||||||| ||||||| | |||||||| | || ||||| |||||||| |||||||||||||| ||||||||| | | | |||| || |||| |
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|
| T |
27221142 |
acttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatctacccgaccatggtgatggaa |
27221241 |
T |
|
| Q |
122 |
cgtccactgatttcgttgctccttgtcccaactcaaaacctgttgttgatagtt-aggtgtttgaatctaagtttaaggttcctggccatacagtgtata |
220 |
Q |
| |
|
||||||||| | || |||| ||||||||| |||||||| |||||||| | |||| |||| ||| | |||| ||||||||||||||||||||| |
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|
| T |
27221242 |
ggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttgg-tctccggttaacgttcctggccatacagtgtatt |
27221340 |
T |
|
| Q |
221 |
cacatctattcatgaatgtcaccttggctcctccaacc |
258 |
Q |
| |
|
|||| ||||| |||| |||||||| |||||||||||| |
|
|
| T |
27221341 |
cacacctatttgtgaaagtcaccttagctcctccaacc |
27221378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 27207981 - 27208045
Alignment:
| Q |
194 |
ttaaggttcctggccatacagtgtatacacatctattcatgaatgtcaccttggctcctccaacc |
258 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
27207981 |
ttaacgttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaacc |
27208045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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