View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_14 (Length: 250)
Name: NF10940_low_14
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 26042806 - 26042571
Alignment:
| Q |
16 |
gggtcacacaatttacaggagtcttaaactttaataaacactaccattaaacatgacaaacataatcacacgtatc-tctccaattaaaaaccagtgcca |
114 |
Q |
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| T |
26042806 |
gggtcacacaatttacaagagtcttaaactttaataaacactaccattaaacatgacaaacataatcacacgtatcctctccaattaaaaaccagtgcca |
26042707 |
T |
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| Q |
115 |
attacaattcaagaaagataaacacatctgaaaaatcaatctcaaacttatttaaggattaccacaataaactaaacaaagcaacaaaaacatctcacca |
214 |
Q |
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| T |
26042706 |
attacaattcaagaaagataaacacatctgaaaaatcattctcaaacttatttaaagattactacaataaactaaacaaagcaacaaaaacatgtcacca |
26042607 |
T |
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| Q |
215 |
ttcatttgcttgctctagttggcaactgaatcctac |
250 |
Q |
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| T |
26042606 |
ttcatttgcttgttctagttggcaactgaatcctac |
26042571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 26048960 - 26048884
Alignment:
| Q |
174 |
taccacaataaactaaacaaagcaacaaaaacatctcaccattcatttgcttgctctagttggcaactgaatcctac |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26048960 |
taccacaataaactaaacaaagcaacaaaaacatgtcaccattcatttgcttgttctagttggcaactgaatcctac |
26048884 |
T |
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