View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10940_low_15 (Length: 244)

Name: NF10940_low_15
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10940_low_15
NF10940_low_15
[»] chr5 (12 HSPs)
chr5 (10-232)||(41369689-41369912)
chr5 (55-230)||(31225166-31225341)
chr5 (55-231)||(31178426-31178602)
chr5 (24-192)||(41366373-41366541)
chr5 (55-230)||(31188472-31188647)
chr5 (54-190)||(41324312-41324448)
chr5 (52-186)||(41332221-41332355)
chr5 (54-232)||(41316243-41316421)
chr5 (52-232)||(41337150-41337330)
chr5 (69-192)||(41328225-41328348)
chr5 (109-190)||(41310558-41310639)
chr5 (55-95)||(41286280-41286320)
[»] chr4 (1 HSPs)
chr4 (20-186)||(17249204-17249370)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 41369689 - 41369912
Alignment:
Q  10 acatattagagttcaaatcagcaatggaggaatcaataaagttattgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41369689 acatattagagttcaaatcagcaatggaggaatcaataaagttattggaaggattttgcattgctgatttgtatccttctattaaaatacttcaaagggt 41369788  T
Q  110 gagtagggcaaagaccaaaatggaaaaacttcagagagaggc-tgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaat 208  Q
     |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  41369789 aagtagggcaaagaccaaaatggaaaaacttcagagaaaggcatgatattatattgcaagatatcatcaatgatcacaaaaacaatcatagagaagaaat 41369888  T
Q  209 caaggaagaagacctagttgatgt 232  Q
    ||||||||||||||||||||||||    
T  41369889 caaggaagaagacctagttgatgt 41369912  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 31225166 - 31225341
Alignment:
Q  55 tgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctga 154  Q
    ||||||||||||| |||| |||| ||||||||||||| |||||  ||||| ||||||||||||| ||||||||| | ||||| ||||| | ||||  |||    
T  31225166 tgggaggattttgtattgttgatgtgtatccttctataaaaatgcttcaatgggtgagtagggcgaagaccaaagttgaaaagcttcataaagagattga 31225265  T
Q  155 tatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgat 230  Q
    |||||||||||||||||||||| ||||||| ||||  | ||| |  ||||||| |||||| ||||| |||||||||    
T  31225266 tatgatattgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgat 31225341  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 31178602 - 31178426
Alignment:
Q  55 tgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctga 154  Q
    ||||||||||||| ||||||||| |||||||||||||||||||  ||||| |||||||| |||  ||||||||| | |||||  |||| | ||||  |||    
T  31178602 tgggaggattttgtattgctgatgtgtatccttctattaaaatgcttcaacgggtgagtggggtgaagaccaaatttgaaaagtttcataaagagattga 31178503  T
Q  155 tatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatg 231  Q
    ||||||||||||||||||| || ||||||| ||||  | ||| |  ||||||| |||||| ||||| ||||||||||    
T  31178502 tatgatattgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatg 31178426  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 41366373 - 41366541
Alignment:
Q  24 aaatcagcaatggaggaatcaataaagttattgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaaga 123  Q
    |||||||||||| |||||  | | ||| |||||||||||||||   |||| |||||||||||||||||||||||  |||||| | | ||| || ||| ||    
T  41366373 aaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaagga 41366472  T
Q  124 ccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagta 192  Q
      ||| | ||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  41366473 aaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagta 41366541  T

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Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 31188647 - 31188472
Alignment:
Q  55 tgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctga 154  Q
    |||||| |||||| ||||||||| ||||||||||| |||||||  ||||| ||||||||||||| ||||| ||| | ||||| ||||| | ||||  |||    
T  31188647 tgggagaattttgtattgctgatgtgtatccttctgttaaaatgtttcaatgggtgagtagggcgaagacgaaagttgaaaagcttcataaagagattga 31188548  T
Q  155 tatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgat 230  Q
    ||||||||||||||||||||||  |||||| ||||  | ||| |  ||||||| |||||| ||||| |||||||||    
T  31188547 tatgatattgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgat 31188472  T

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Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 41324312 - 41324448
Alignment:
Q  54 ttgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctg 153  Q
    ||||||||  |||| |||| |||||||||||||||||||||| |  ||||| | ||||||||||| ||| ||||||||||||||||||| | ||||  ||    
T  41324312 ttgggaggcatttgtattgttgatttgtatccttctattaaattgcttcaatgcgtgagtagggcgaaggccaaaatggaaaaacttcacaaagagattg 41324411  T
Q  154 atatgatattgcaagatatcatcaatgatcacaaaag 190  Q
    |||||||||||||||| || ||| | |||||||||||    
T  41324412 atatgatattgcaagacattatcgacgatcacaaaag 41324448  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 41332221 - 41332355
Alignment:
Q  52 tattgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggc 151  Q
    |||| |||||||||   ||||| |||||||||||||||||||||||  ||||| |  |||||||||  |||||||||||||||||| |||| ||||||      
T  41332221 tattaggaggatttgaaattgcagatttgtatccttctattaaaatgcttcaatgcatgagtagggagaagaccaaaatggaaaaaattcatagagagct 41332320  T
Q  152 tgatatgatattgcaagatatcatcaatgatcaca 186  Q
    |||||||||| ||||||| |||||| | |||||||    
T  41332321 tgatatgataatgcaagacatcatcgacgatcaca 41332355  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 41316243 - 41316421
Alignment:
Q  54 ttgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctg 153  Q
    ||||||||  |||| ||||  ||||||| ||||||||||||| |  ||||| |  ||||||| || ||||||||||||||||||||||| | ||||  ||    
T  41316243 ttgggaggcgtttgtattgtggatttgtttccttctattaaattgcttcaatgcttgagtagagcgaagaccaaaatggaaaaacttcacaaagagcttg 41316342  T
Q  154 atatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgt 232  Q
    |||||| ||||||||| |||||| | ||||||||||| | ||| |  ||||||| ||| || ||||| ||||| |||||    
T  41316343 atatgacattgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgt 41316421  T

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Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 41337150 - 41337330
Alignment:
Q  52 tattgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggc 151  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||||| |||||| ||| ||||| |  ||||||| | | || | | | ||  |||||      
T  41337150 tattgggagaattttgtattgctgacttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagagat 41337249  T
Q  152 tgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgt 232  Q
    ||||| |||||||||||| |||||||||||||| | ||  ||||| ||  ||  || |||||| |||||||||||||||||    
T  41337250 tgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgt 41337330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 41328225 - 41328348
Alignment:
Q  69 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 168  Q
    ||||| ||||||||||||||||||||| |  ||||| || ||| |||||  ||||||||||||||||||||||| | ||||  ||||||||||   ||||    
T  41328225 attgcagatttgtatccttctattaaattgcttcaatggatgactagggagaagaccaaaatggaaaaacttcatacagagattgatatgatagcacaag 41328324  T
Q  169 atatcatcaatgatcacaaaagta 192  Q
    | |||||| | ||||||| |||||    
T  41328325 acatcatcgacgatcacagaagta 41328348  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 41310558 - 41310639
Alignment:
Q  109 tgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaag 190  Q
    |||||||||| ||| |||||||||||||| |||| | ||||  | |||||||||||||||| |||||| | |||||||||||    
T  41310558 tgagtagggcgaaggccaaaatggaaaaagttcacaaagagatttatatgatattgcaagacatcatcgacgatcacaaaag 41310639  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 41286280 - 41286320
Alignment:
Q  55 tgggaggattttgcattgctgatttgtatccttctattaaa 95  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  41286280 tgggaggattttgcattgttgatttgtatccttctattaaa 41286320  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 17249370 - 17249204
Alignment:
Q  20 gttcaaatcagcaatggaggaatcaataaagttattgggaggattttgcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggca 119  Q
    ||||||||||||||| ||||||  | | |  || |||||||||||||| |||| |||||||||||||||||| |||||| || ||||||| |||  ||      
T  17249370 gttcaaatcagcaatagaggaaatagtgagtttgttgggaggattttgtattgttgatttgtatccttctatcaaaatacttaaaagggtaagtcaggtg 17249271  T
Q  120 aagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcaca 186  Q
    || |||||||||||||||||||| || ||   ||||||||||||||||||||||||  |||||||||    
T  17249270 aaaaccaaaatggaaaaacttcatagggaaattgatatgatattgcaagatatcatagatgatcaca 17249204  T

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