View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_17 (Length: 241)
Name: NF10940_low_17
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 27416053 - 27416273
Alignment:
| Q |
4 |
aagtggcatcaaatggaggacaagatttatacgttgtgatcaacgcttatgggttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttg |
103 |
Q |
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| T |
27416053 |
aagtggcatcaaatggaggacaagatttatacagtgtgagcaacacttatgggttcaatgtgccagtatctgtaactccacgaggtgggaatggcccttg |
27416152 |
T |
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| Q |
104 |
caaagcctctagttgtccagcgaatatcaacgatgtgtgt-cccccggaacttcaagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttg |
202 |
Q |
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| T |
27416153 |
cgaagcctctagttgtccagcaaatatcaactatatgtgtccccccggaacttcaagtaacaggttctgacttgggtgtcattgcttgtaagagtgcttg |
27416252 |
T |
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| Q |
203 |
catggcttttaatacagatca |
223 |
Q |
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|||||||||||||||| |||| |
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| T |
27416253 |
catggcttttaatacatatca |
27416273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 27410005 - 27409789
Alignment:
| Q |
7 |
tggcatcaaatggaggacaagatttatacgttgtgatcaacgcttatgggttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgcaa |
106 |
Q |
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||||||||||||||||||||||||| |||| ||||| ||||| | | ||||||||||||||| | | ||||||||||| |||||||||||||||||||| |
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| T |
27410005 |
tggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacgggttcaacgtgccaatttttgtaactccacaaggtgggaatggcccttgcaa |
27409906 |
T |
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| Q |
107 |
agcctctagttgtccagcgaatatcaacgatgtgtgtcccccggaacttcaagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgcatg |
206 |
Q |
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| T |
27409905 |
agccgctagttgtccagcaaatatcaacgctgtgtgtcccgcagaacttcaagtaaaaggttctgatgggagtgtcgttgcttgtaagagtgcttgcttg |
27409806 |
T |
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| Q |
207 |
gcttttaatacagatca |
223 |
Q |
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||||||||||||||||| |
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| T |
27409805 |
gcttttaatacagatca |
27409789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 27389051 - 27388833
Alignment:
| Q |
5 |
agtggcatcaaatggaggacaagatttatacgttgtgatcaacgcttatgggttcaacgtgccagtatctgtaactccacgtggtgggaatggcccttgc |
104 |
Q |
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||||||||||||||||||||||||||| |||| ||||| ||||| | | || |||||||||||| | || |||||||||| || || | |||| |||| |
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| T |
27389051 |
agtggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacggtttcaacgtgccaatgtccgtaactccacaaggcggaagtggcgattgc |
27388952 |
T |
|
| Q |
105 |
aaagcctctagttgtccagcgaatatcaacgatgtgtgtcccccggaacttcaagtaagaggttctgatgcaggtgtcattgcttgtaaaagtgcttgca |
204 |
Q |
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| T |
27388951 |
aaatcctctagctgtccagcaaacatcaactctgtgtgtcccgcggagcttcaattaaaaggttctgatggaagtgtcgttgcttgtaagagtgcttgtt |
27388852 |
T |
|
| Q |
205 |
tggcttttaatacagatca |
223 |
Q |
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||||||||||||| ||||| |
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| T |
27388851 |
tggcttttaataccgatca |
27388833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 41457923 - 41457964
Alignment:
| Q |
101 |
ttgcaaagcctctagttgtccagcgaatatcaacgatgtgtg |
142 |
Q |
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| T |
41457923 |
ttgcaaaccctcgagttgtcccgcgaatatcaacgatgtgtg |
41457964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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