View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_18 (Length: 240)
Name: NF10940_low_18
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33811624 - 33811403
Alignment:
| Q |
1 |
cactatatttttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811624 |
cactatatttttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaact |
33811525 |
T |
|
| Q |
101 |
cttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagctaccaattgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33811524 |
cttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgcc |
33811425 |
T |
|
| Q |
201 |
aagtttgtcaatttgttactga |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33811424 |
aagtttgtcaatttgttactga |
33811403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33816542 - 33816321
Alignment:
| Q |
1 |
cactatatttttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816542 |
cactatatttttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaact |
33816443 |
T |
|
| Q |
101 |
cttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagctaccaattgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33816442 |
cttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgcc |
33816343 |
T |
|
| Q |
201 |
aagtttgtcaatttgttactga |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
33816342 |
aagtttgtcaatttgttactga |
33816321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33807970 - 33807749
Alignment:
| Q |
1 |
cactatatttttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33807970 |
cactatatttttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaact |
33807871 |
T |
|
| Q |
101 |
cttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagctaccaattgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
33807870 |
cttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttacccattgcc |
33807771 |
T |
|
| Q |
201 |
aagtttgtcaatttgttactga |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
33807770 |
aagtttgtcaatttgttactga |
33807749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 50603156 - 50603003
Alignment:
| Q |
1 |
cactatatttttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattg-----tgttgtggtgtgttt-cattgct |
94 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||| |
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| T |
50603156 |
cactatatttttctctcac--tcttatgaggaactttctatttttctctcaactctgtgtgagtgaggattgtgctatgttgtggtgtgtttgctttgct |
50603059 |
T |
|
| Q |
95 |
gaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttc |
150 |
Q |
| |
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||| ||||||||||||||||||| | |||||||| |||||||||||||||||| |
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|
| T |
50603058 |
gaagctcttctctatttatagagagaaatgaaccgtaagcattaaatgcttggttc |
50603003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 31152173 - 31152298
Alignment:
| Q |
2 |
actatatttttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || | ||||||||||||||| || | |||||||| || |
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| T |
31152173 |
actatatttttctctcacactcttacgaggaactctctatttttctctcaactcccgaggattgtg--ttgtgttgtggtgtgattgctttgctgaagct |
31152270 |
T |
|
| Q |
101 |
cttctctatttatagagggttttgaacc |
128 |
Q |
| |
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||||||||||||||||| | |||||||| |
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|
| T |
31152271 |
cttctctatttatagagagatttgaacc |
31152298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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