View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_20 (Length: 229)
Name: NF10940_low_20
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 6565210 - 6564989
Alignment:
| Q |
7 |
ctttgcacattaagtgagaaacaannnnnnngtagaaactacggtttttgtatgaaatgagaaagaaagatagaaggaaggacaaagactatatgtttct |
106 |
Q |
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| T |
6565210 |
ctttgcacattaagtgagaaacaatttttttgtagaaactatggtttttgtatgaaatgagaaagaaagatagaaggaaggacaaagactatatgtttct |
6565111 |
T |
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| Q |
107 |
catgagaaatgaaataacatagttctcagatttggaattaaaacatcattcctcactgttaaagtaagacttagtttatgttatgcttttaaaccaattt |
206 |
Q |
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| T |
6565110 |
catgagaaatgaaataacatagttctcagatttggaattaaaacatcattcctcactgttaaagtaa-acttagtttatgttatgcttttaaaccaattt |
6565012 |
T |
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| Q |
207 |
cttatttttctcaatttttctaa |
229 |
Q |
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| T |
6565011 |
cttatttttctcaatttttctaa |
6564989 |
T |
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