View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_3 (Length: 463)
Name: NF10940_low_3
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 461
Target Start/End: Original strand, 52376345 - 52376773
Alignment:
| Q |
21 |
ggtattacatactcaaccccgtttaaaatttcaatggaaacttaactgtttatgttaataattaacattgaattaagaatgtgatgatgttacaattcta |
120 |
Q |
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| T |
52376345 |
ggtattacatactcaaccccgtttaaaatttcaacggaaacttaactgtttatgttaataattaacattgaattaagaatgtgatgatgttacaattcta |
52376444 |
T |
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| Q |
121 |
tacttcaatcatcatctgtagaggtccctttaggtgctcctttaggtgcacctgaaggtgcaaccatttgatcatcgtcatcatcatcgtctgttagatc |
220 |
Q |
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| T |
52376445 |
tacttcaatcatcatctgtagaggtccctt------------taggtgcacctgaaggtgcaaccatttgatcatcgtcatcatcatcatctgttagatc |
52376532 |
T |
|
| Q |
221 |
cccttgaggtgctccggctggcgacacaattggagcacttccaggtgctttagaactaccggctacattctcgccattgccttttggtgcctctgcaggc |
320 |
Q |
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| T |
52376533 |
cccttgaggtgctccggttggagacacaattggagcactttcaggtgctttagaactaccggctacattcgcgccattgccttttggtgcctctgcaggc |
52376632 |
T |
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| Q |
321 |
gcgttggtggatgctgctgtgggtgcatttgtgggtgcagattcaggtgttttgcttggttcgtttgatggtgcatttgttggtgcttgttgtggtgatt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52376633 |
gcgttggtggatgctgctgtgggtgcatttgtgggtgcagattcaggtgttttgcttggttcgtttgatggtgcatttgttggtgcttgttgtggtgatt |
52376732 |
T |
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| Q |
421 |
tattggatgaaccatctgttgttggtgtctgtgctcctcct |
461 |
Q |
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| T |
52376733 |
tattggatgaaccatctgctgttggtgtcggtgctcctcct |
52376773 |
T |
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