View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_4 (Length: 457)
Name: NF10940_low_4
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 166 - 358
Target Start/End: Complemental strand, 25506228 - 25506036
Alignment:
| Q |
166 |
aatcaaacaaacaaactcattcttcttcaatttaggtcaaaaagtgttcgaatgggatcaaaccttagatgaggtcaatatttacatcaatcttcctcca |
265 |
Q |
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| T |
25506228 |
aatcaaacaaacaaactcattcttcttcaatttaggtcaaaaagtgttcgaatgggatcaaactttagatgaggtcaatatttacatcaatcttcctcca |
25506129 |
T |
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| Q |
266 |
aatgttcattccaagctattttactgtacgattcagtccaagcatattgaacttggtatcaaaggcaatcctccatttctcaatgtaacccta |
358 |
Q |
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| T |
25506128 |
aatgttcattccaagctattttactgtacgattcagtccaagcatattgaacttggtatcaaaggcaatcctccatttctcaatgtaacccta |
25506036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 25506347 - 25506274
Alignment:
| Q |
47 |
atcaaagacgagtttacaaaaatggcagaaaaattggcaccagaaaagcgtcacatattcctccacaacggtac |
120 |
Q |
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| T |
25506347 |
atcaaagacgagtttacaaaaatggcagaaaaattggcaccagaaaagcgtcacatattcctccacaacggtac |
25506274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 384 - 439
Target Start/End: Complemental strand, 25506011 - 25505956
Alignment:
| Q |
384 |
ttgttgcataatatgtcataattgttgctgatgtgtgtgatttgatttgatttttc |
439 |
Q |
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| T |
25506011 |
ttgttgcataatatgtcataattgttgctgatgtgtgtgatttgatttgatttttc |
25505956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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