View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_5 (Length: 444)
Name: NF10940_low_5
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 54702951 - 54702661
Alignment:
| Q |
17 |
agatatcccataatatttatataaccaaccaagtgtagcaaaatttataactaactgaaactgttaaatgttgcagcatct-----------gaatgcta |
105 |
Q |
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| T |
54702951 |
agatatcccataatatttatataaccaa----gtgtagcaaaatt-ataactaactgaaactgttaaatgttgcagcatctaaatgatatctgaatgcta |
54702857 |
T |
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| Q |
106 |
cactgcatgcttctatcagattttgagacacatcaatagatattggtacaaagtcaaagggggtgtgtacatcagctaaacgatgattcagaaatggaaa |
205 |
Q |
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| T |
54702856 |
cactgcatgcttctatcagattttgagacacatcgatagatattggtacaaagtcaaagggggtgtgtatatcagctaaacgatgattcagaaatggaaa |
54702757 |
T |
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| Q |
206 |
atgcactgatactgggtgcagaagtagtgttcaagcttcatctagagatacacagttttgaaaaataaataaattcaaatgcatattgcatgttta |
301 |
Q |
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| T |
54702756 |
atgcactgatactgggtgcagaagtagtgttcaagcttcatctagagatacacagttttgaaaaataaataaattcaaatgcatattgcatgttta |
54702661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 54702589 - 54702541
Alignment:
| Q |
386 |
catgtgctaaaattgctgaaataccgtcagtaacgtgtttatctctctg |
434 |
Q |
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| T |
54702589 |
catgtgctaaaattgctgaaatactgtcggtaacgtgtttatctctctg |
54702541 |
T |
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