View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10940_low_6 (Length: 411)
Name: NF10940_low_6
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26042571 - 26042381
Alignment:
| Q |
1 |
cacaaaggacatgagttgcctctattcaaccaacgacgaatgcatttcatatgaaatgtgtgtgataaacacggcatagcgacaccaacgataacatcat |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26042571 |
cacaaaggacaagagttgcctctattcaaccaacgacggatgcatttcatatgaaatgtgtgtgataaacacggcatagcgacaccaacgataacatcat |
26042472 |
T |
|
| Q |
101 |
tcaaacaaatagcacattcttccactttttcaactttcaccacctccaattcatcgatacatgactttgccgcgggaatcaacccattatt |
191 |
Q |
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| T |
26042471 |
tcaaacaaatagcacattcttccactttttcaactttcaccacctccaattcatcgatacatgactttgccgcgggaatcaacccattatt |
26042381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26048884 - 26048694
Alignment:
| Q |
1 |
cacaaaggacatgagttgcctctattcaaccaacgacgaatgcatttcatatgaaatgtgtgtgataaacacggcatagcgacaccaacgataacatcat |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26048884 |
cacaaaggacaagagttgcctctattcaaccaacgacgaatgcatttcatatgaaatgtgtgtgataaacacggcatagcgacaccaatgataacatcat |
26048785 |
T |
|
| Q |
101 |
tcaaacaaatagcacattcttccactttttcaactttcaccacctccaattcatcgatacatgactttgccgcgggaatcaacccattatt |
191 |
Q |
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| T |
26048784 |
tcaaacaaatagcacattcttccactttttcaactttcaccacctccaattcctcgatacatgactttgccgccggaatcaacccattatt |
26048694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 253 - 396
Target Start/End: Complemental strand, 26042331 - 26042188
Alignment:
| Q |
253 |
ctggcccttgtaacgctaagaacgactcaaatagaaagaaccttttgattcttatagacaccattaaccatatctcgagcacacttgaaaatatctgcaa |
352 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26042331 |
ctggcccttgtaatgctaagaacgactcgaatagaaagaaccctttgattcttatagacaccattaaccatatctcgagcacacttgaaaatatctgcaa |
26042232 |
T |
|
| Q |
353 |
ctacatacctaaaagcatcttcgggaacatccatttgagaaagc |
396 |
Q |
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| T |
26042231 |
ctacatacctaaaagcatcttcgggaacatccatttgagaaagc |
26042188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 253 - 396
Target Start/End: Complemental strand, 26048632 - 26048489
Alignment:
| Q |
253 |
ctggcccttgtaacgctaagaacgactcaaatagaaagaaccttttgattcttatagacaccattaaccatatctcgagcacacttgaaaatatctgcaa |
352 |
Q |
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||||||| |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
26048632 |
ctggcccgtgtaacgctaagaacgactcgaatagaaagatccctttgattcttatagacaccattaaccatatcccgagcacacttgaaaatatctgcca |
26048533 |
T |
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| Q |
353 |
ctacatacctaaaagcatcttcgggaacatccatttgagaaagc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26048532 |
ctacatacctaaaagcatcttcgggaacatccatttgagaaagc |
26048489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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